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comparison tool_data_table_conf.xml.sample @ 5:8952990fcab9

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Update to snpEff version 3.4 and add data managers to download snpEff genome reference databases
author Jim Johnson <jj@umn.edu>
date Wed, 27 Nov 2013 09:11:32 -0600
parents e1d9f6a0ad53
children 4be8e0068bc3
comparison
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4:47ddc9f4d0b6 5:8952990fcab9
2 <table name="snpeff_databases" comment_char="#"> 2 <table name="snpeff_databases" comment_char="#">
3 <columns>value, name</columns> 3 <columns>value, name</columns>
4 <file path="tool-data/snpeff_databases.loc" /> 4 <file path="tool-data/snpeff_databases.loc" />
5 </table> 5 </table>
6 <table name="snpeff_genomedb" comment_char="#"> 6 <table name="snpeff_genomedb" comment_char="#">
7 <columns>value, name</columns> 7 <columns>value, name, path</columns>
8 <file path="tool-data/snpeff_genomedb.loc" /> 8 <file path="tool-data/snpeff_genomedb.loc" />
9 </table> 9 </table>
10 <table name="snpeff_regulationdb" comment_char="#"> 10 <table name="snpeff_regulationdb" comment_char="#">
11 <columns>value, name</columns> 11 <columns>genome, value, name</columns>
12 <file path="tool-data/snpeff_regulationdb.loc" /> 12 <file path="tool-data/snpeff_regulationdb.loc" />
13 </table>
14 <table name="snpeff_annotations" comment_char="#">
15 <columns>genome, value, name</columns>
16 <file path="tool-data/snpeff_annotations.loc" />
13 </table> 17 </table>
14 </tables> 18 </tables>
15 19