Mercurial > repos > jjohnson > snpeff

diff data_manager/data_manager_snpEff_databases.xml @ 2:6ad9205c1307

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Update to SnpEff version 3.3
author Jim Johnson <jj@umn.edu>
date Fri, 04 Oct 2013 09:09:29 -0500
parents e1d9f6a0ad53
children 47ddc9f4d0b6
line wrap: on
line diff
--- a/data_manager/data_manager_snpEff_databases.xml	Thu Jul 04 09:49:15 2013 -0500
+++ b/data_manager/data_manager_snpEff_databases.xml	Fri Oct 04 09:09:29 2013 -0500
@@ -1,10 +1,10 @@
-<tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="3.2" tool_type="manage_data">
+<tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="3.3" tool_type="manage_data">
 	<description>Read the list of available snpEff databases</description>
 	<requirements>
-		<requirement type="package" version="3.2">snpEff</requirement>
+		<requirement type="package" version="3.3">snpEff</requirement>
 	</requirements>
 	<command interpreter="python">
-        data_manager_snpEff_databases.py --jar_path \$JAVA_JAR_PATH/snpEff.jar "$out_file"
+        data_manager_snpEff_databases.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar "$out_file"
         </command>
 	<inputs>
 	</inputs>