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comparison data_manager/data_manager_snpEff_databases.xml @ 2:6ad9205c1307

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Update to SnpEff version 3.3
author Jim Johnson <jj@umn.edu>
date Fri, 04 Oct 2013 09:09:29 -0500
parents e1d9f6a0ad53
children 47ddc9f4d0b6
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1:bea875f081e8 2:6ad9205c1307
1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="3.2" tool_type="manage_data"> 1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="3.3" tool_type="manage_data">
2 <description>Read the list of available snpEff databases</description> 2 <description>Read the list of available snpEff databases</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.2">snpEff</requirement> 4 <requirement type="package" version="3.3">snpEff</requirement>
5 </requirements> 5 </requirements>
6 <command interpreter="python"> 6 <command interpreter="python">
7 data_manager_snpEff_databases.py --jar_path \$JAVA_JAR_PATH/snpEff.jar "$out_file" 7 data_manager_snpEff_databases.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar "$out_file"
8 </command> 8 </command>
9 <inputs> 9 <inputs>
10 </inputs> 10 </inputs>
11 <outputs> 11 <outputs>
12 <data name="out_file" format="data_manager_json"/> 12 <data name="out_file" format="data_manager_json"/>