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comparison snpEff_databases.xml @ 18:36f3c82323e6

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Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
author Jim Johnson <jj@umn.edu>
date Tue, 13 Jan 2015 13:36:11 -0600
parents 3790e16a0be0
children bb0797deab78
comparison
equal deleted inserted replaced
17:13d81e5226cd 18:36f3c82323e6
1 <tool id="snpEff_databases" name="SnpEff Available Databases" version="4.0.0"> 1 <tool id="snpEff_databases" name="SnpEff Available Databases" version="@WRAPPER_VERSION@.0">
2 <description></description> 2 <description></description>
3 <expand macro="requirements" /> 3 <expand macro="requirements" />
4 <macros> 4 <macros>
5 <import>snpEff_macros.xml</import> 5 <import>snpEff_macros.xml</import>
6 </macros> 6 </macros>
7 <command> 7 <command>
8 <![CDATA[
8 java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' > $snpeff_dbs 9 java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' > $snpeff_dbs
10 ]]>
9 </command> 11 </command>
10 <inputs> 12 <inputs>
11 </inputs> 13 </inputs>
12 <outputs> 14 <outputs>
13 <data format="tabular" name="snpeff_dbs" label="${tool.name} available databases" /> 15 <data format="tabular" name="snpeff_dbs" label="${tool.name} available databases" />