Mercurial > repos > jjohnson > snpeff
annotate snpEff_macros.xml @ 21:c780e3f75b3d
Filter genome history snpeffdb by snpeff_version
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 14 Jan 2015 12:03:21 -0600 |
| parents | 7a46f9a72d3c |
| children | bb0797deab78 |
| rev | line source |
|---|---|
| 7 | 1 <macros> |
| 2 <xml name="requirements"> | |
| 3 <requirements> | |
| 12 | 4 <requirement type="package" version="4.0">snpEff</requirement> |
| 7 | 5 </requirements> |
| 6 </xml> | |
| 7 <xml name="stdio"> | |
| 8 <stdio> | |
| 9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> | |
| 10 <exit_code range="1:" level="fatal" description="Error" /> | |
| 11 </stdio> | |
| 12 </xml> | |
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36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
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diff
changeset
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13 <token name="@WRAPPER_VERSION@">4.0</token> |
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c780e3f75b3d
Filter genome history snpeffdb by snpeff_version
Jim Johnson <jj@umn.edu>
parents:
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14 <token name="@SNPEFF_VERSION@">SnpEff4.0</token> |
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7a46f9a72d3c
Fix version on SNPEFF_DATABASE_URL in snpEff_macros.xml
Jim Johnson <jj@umn.edu>
parents:
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15 <token name="@SNPEFF_DATABASE_URL@">http://sourceforge.net/projects/snpeff/files/databases/v4_0/</token> |
| 7 | 16 <token name="@EXTERNAL_DOCUMENTATION@"> |
| 17 | |
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c5288d5a446e
Update to version 3.6 and refactor to new repositories: snpsift, snpeff_datatypes, data_manager_snpeff
Jim Johnson <jj@umn.edu>
parents:
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changeset
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18 For details about this tool, please go to: |
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c5288d5a446e
Update to version 3.6 and refactor to new repositories: snpsift, snpeff_datatypes, data_manager_snpeff
Jim Johnson <jj@umn.edu>
parents:
8
diff
changeset
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19 http://snpeff.sourceforge.net/SnpEff_manual.html |
| 7 | 20 |
| 21 </token> | |
| 22 <token name="@CITATION_SECTION@">------ | |
| 23 | |
| 24 **Citation** | |
| 25 | |
| 26 For the underlying tool, please cite the following two publications: | |
| 27 | |
| 28 SnpEff citation: | |
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36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
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29 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly 6(2):80-92, 2012 |
| 7 | 30 |
| 31 </token> | |
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36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
32 <xml name="citations"> |
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36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
33 <citations> |
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36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
34 <citation type="doi">10.4161/fly.19695</citation> |
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36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
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35 <yield /> |
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36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
36 </citations> |
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36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
37 </xml> |
| 7 | 38 </macros> |