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diff rsem_prepare_reference.xml @ 1:1ff2fc8da328

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Updates to rsem_calculate_expression.xml
author Jim Johnson <jj@umn.edu>
date Thu, 05 Dec 2013 10:54:28 -0600
parents 64d45f959303
children f6b8155ab12a
line wrap: on
line diff
--- a/rsem_prepare_reference.xml	Mon Nov 11 13:54:43 2013 -0500
+++ b/rsem_prepare_reference.xml	Thu Dec 05 10:54:28 2013 -0600
@@ -5,6 +5,8 @@
     <requirement type="package" version="1.0.0">bowtie</requirement>
   </requirements>
   <command>
+    mkdir $reference_file.extra_files_path &amp;&amp; 
+    cd $reference_file.extra_files_path &amp;&amp; 
     rsem-prepare-reference 
     #if $polya.polya_use == 'add':
       #if $polya.polya_length: