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comparison rsem_prepare_reference.xml @ 1:1ff2fc8da328

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Updates to rsem_calculate_expression.xml
author Jim Johnson <jj@umn.edu>
date Thu, 05 Dec 2013 10:54:28 -0600
parents 64d45f959303
children f6b8155ab12a
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0:64d45f959303 1:1ff2fc8da328
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.17">rsem</requirement> 4 <requirement type="package" version="1.1.17">rsem</requirement>
5 <requirement type="package" version="1.0.0">bowtie</requirement> 5 <requirement type="package" version="1.0.0">bowtie</requirement>
6 </requirements> 6 </requirements>
7 <command> 7 <command>
8 mkdir $reference_file.extra_files_path &amp;&amp;
9 cd $reference_file.extra_files_path &amp;&amp;
8 rsem-prepare-reference 10 rsem-prepare-reference
9 #if $polya.polya_use == 'add': 11 #if $polya.polya_use == 'add':
10 #if $polya.polya_length: 12 #if $polya.polya_length:
11 --polyA-length $polya.polya_length 13 --polyA-length $polya.polya_length
12 #end if 14 #end if