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1 <tool_dependency>
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2 <package name="cap3" version="3">
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3 <install version="1.0">
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4 <actions_group>
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5 <!-- Download the binaries for CAP3 compatible with 64-bit OSX. -->
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6 <actions os="darwin" architecture="x86_64">
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7 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.macosx.intel64.tar</action>
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8 <action type="move_file">
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9 <source>cap3</source>
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10 <destination>$INSTALL_DIR</destination>
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11 </action>
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12 <action type="move_file">
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13 <source>formcon</source>
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14 <destination>$INSTALL_DIR</destination>
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15 </action>
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16 </actions>
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17 <!-- Download the binaries for CAP3 compatible with 32-bit OSX. -->
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18 <actions os="darwin" architecture="i386">
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19 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.macosx.intel32.tar</action>
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20 <action type="move_file">
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21 <source>cap3</source>
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22 <destination>$INSTALL_DIR</destination>
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23 </action>
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24 <action type="move_file">
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25 <source>formcon</source>
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26 <destination>$INSTALL_DIR</destination>
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27 </action>
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28 </actions>
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29 <!-- Download the binaries for CAP3 compatible with 64-bit Linux. -->
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30 <actions os="linux" architecture="x86_64">
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31 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.linux.x86_64.tar</action>
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32 <action type="move_file">
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33 <source>cap3</source>
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34 <destination>$INSTALL_DIR</destination>
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35 </action>
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36 <action type="move_file">
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37 <source>formcon</source>
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38 <destination>$INSTALL_DIR</destination>
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39 </action>
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40 </actions>
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41 <!-- Download the binaries for CAP3 compatible with 32-bit Linux (i386). -->
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42 <actions os="linux" architecture="i386">
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43 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.linux.tar</action>
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44 <action type="move_file">
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45 <source>cap3</source>
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46 <destination>$INSTALL_DIR</destination>
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47 </action>
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48 <action type="move_file">
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49 <source>formcon</source>
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50 <destination>$INSTALL_DIR</destination>
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51 </action>
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52 </actions>
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53 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
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54 <actions>
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55 <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action>
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56 <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action>
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57 <action type="shell_command">uname</action>
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58 <action type="shell_command">arch</action>
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59 <action type="shell_command">echo Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!</action>
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60 <action type="shell_command">false</action>
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61 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
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62 </actions>
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63 <action type="set_environment">
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64 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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65 </action>
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66 </actions_group>
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67 </install>
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68 <readme>
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69 CAP3: A DNA sequence assembly program.
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70 Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res., 9, 868-877.
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71 http://seq.cs.iastate.edu/
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72
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73 LICENCE:
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74 CAP3 and PCAP are available for use at company under a licensing agreement from Michigan Tech. For information on a licensing agreement, please contact Robin Kolehmainen by email at rakolehm@mtu.edu or by phone at 906-487-2228. Michigan Tech handles licensing agreements on PCAP for Iowa State.
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75
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76 </readme>
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77 </package>
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78 </tool_dependency>
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