Mercurial > repos > jjohnson > gmap
view tool-data/gmap_indices.loc.sample @ 6:4f358603ee12 draft default tip
Uploaded v3.0.1c with table fix
| author | peterjc |
|---|---|
| date | Fri, 21 Oct 2016 11:15:09 -0400 |
| parents | 10e3476429b5 |
| children |
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#This is a sample file distributed with Galaxy that enables tools #to use a directory of GMAPDB indexed sequences data files. You will need #to create these data files using gmap_build and then create a gmap_indices.loc file #similar to this one (store it in this directory) that points to #the directories in which those files are stored. The gmap_indices.loc #file has this format (white space characters are TAB characters): # #<unique_build_id> <dbkey> <display_name> <kmers> <map,map> <snp,snp> <file_base_path> #hg18 hg18 hg18 (cmet atoi) 12,13,14,15 splicesites,introns snps /depot/data2/galaxy/gmap/hg18 #hg19 hg19 hg19 (cmet atoi) 12,13,14,15 splicesites,introns,snps snps,dbsnp /depot/data2/galaxy/gmap/hg19
