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comparison create_gffdb.xml @ 0:8ba71aead5bc draft

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
author jjohnson
date Sun, 08 Apr 2018 13:26:47 -0400
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1 <tool id="create_gffdb" name="Create GFF DB for GTF or GFF3" version="0.1.0">
2 <description>gffutils sqlite db</description>
3 <requirements>
4 <requirement type="package">gffutils</requirement>
5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/create_gffdb.py' '$input' '$output'
8 ]]></command>
9 <inputs>
10 <param name="input" type="data" format="gtf,gff3" label="GTF or GFF3 Annotation"/>
11 </inputs>
12 <outputs>
13 <data name="output" format="sqlite" label="${tool.name} ${input.name}.sqlite" />
14 </outputs>
15 <tests>
16 <test>
17 <param name="input" ftype="gtf" value="GRCm38.gtf"/>
18 <output name="output" file="GRCm38.gtf.sqlite" ftype="sqlite" compare="sim_size" delta="5000" />
19 </test>
20 <test>
21 <param name="input" ftype="gff3" value="GRCm38.gff3"/>
22 <output name="output" file="GRCm38.gff3.sqlite" ftype="sqlite" compare="sim_size" delta="5000" />
23 </test>
24 </tests>
25 <help><![CDATA[
26 ]]></help>
27 </tool>