Mercurial > repos > jjohnson > gffutils

annotate test-data/GRCm38.gtf @ 2:b956465b8893 draft default tip

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit f84d4d6e7fa7617e4b8298007db22e1355071213-dirty
author jjohnson
date Tue, 17 Apr 2018 10:19:30 -0400
parents 8ba71aead5bc
children
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8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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1 #!genome-build GRCm38.p4
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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2 #!genome-version GRCm38
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3 #!genome-date 2012-01
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4 #!genome-build-accession NCBI:GCA_000001635.6
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5 #!genebuild-last-updated 2016-07
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6 1 ensembl_havana gene 3999557 4409241 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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7 1 havana transcript 3999557 4409241 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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8 1 havana exon 4409170 4409241 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "1"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001378580"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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9 1 havana CDS 4409170 4409187 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "1"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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10 1 havana start_codon 4409185 4409187 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "1"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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11 1 havana exon 4352202 4352837 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "2"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001381766"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
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12 1 havana CDS 4352202 4352837 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "2"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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13 1 havana exon 4351910 4352081 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "3"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001379531"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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14 1 havana CDS 4351910 4352081 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "3"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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15 1 havana exon 4311270 4311433 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "4"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001380053"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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16 1 havana CDS 4311270 4311433 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "4"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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17 1 havana exon 4292926 4293012 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "5"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001377871"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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18 1 havana CDS 4292926 4293012 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "5"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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19 1 havana exon 4284766 4284898 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "6"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001379434"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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20 1 havana CDS 4284766 4284898 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "6"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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21 1 havana exon 4267469 4267620 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "7"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001379919"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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22 1 havana CDS 4267469 4267620 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "7"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
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23 1 havana exon 4261527 4261605 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "8"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001380048"; exon_version "1"; tag "basic";
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24 1 havana CDS 4261527 4261605 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "8"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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25 1 havana exon 4245031 4245106 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "9"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001382043"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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26 1 havana CDS 4245031 4245106 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "9"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
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27 1 havana exon 4243543 4243619 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "10"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001379965"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
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28 1 havana CDS 4243543 4243619 . - 1 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "10"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
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29 1 havana exon 4243417 4243448 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "11"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001379150"; exon_version "1"; tag "basic";
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30 1 havana CDS 4243417 4243448 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "11"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
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31 1 havana exon 4243133 4243262 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "12"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001378202"; exon_version "1"; tag "basic";
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32 1 havana CDS 4243133 4243262 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "12"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
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33 1 havana exon 4231053 4231144 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "13"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001381486"; exon_version "1"; tag "basic";
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34 1 havana CDS 4231053 4231144 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "13"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
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35 1 havana exon 4228443 4228619 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "14"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001382087"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
36 1 havana CDS 4228443 4228619 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "14"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
37 1 havana exon 4226611 4226823 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "15"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001377002"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
38 1 havana CDS 4226611 4226823 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "15"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
39 1 havana exon 4206660 4206837 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "16"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001378749"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
40 1 havana CDS 4206660 4206837 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "16"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
41 1 havana exon 4197534 4197641 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "17"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001379718"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
42 1 havana CDS 4197534 4197641 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "17"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
43 1 havana exon 4170205 4170404 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "18"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001381401"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
44 1 havana CDS 4170205 4170404 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "18"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
45 1 havana exon 4163855 4163941 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "19"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001381514"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
46 1 havana CDS 4163855 4163941 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "19"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
47 1 havana exon 4148612 4148744 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "20"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001376619"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
48 1 havana CDS 4148612 4148744 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "20"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
49 1 havana exon 4147812 4147963 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "21"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001378642"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
50 1 havana CDS 4147812 4147963 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "21"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
51 1 havana exon 4142612 4142766 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "22"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001379236"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
52 1 havana CDS 4142612 4142766 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "22"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
53 1 havana exon 4120015 4120073 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "23"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001377224"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
54 1 havana CDS 4120015 4120073 . - 1 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "23"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
55 1 havana exon 4119668 4119712 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "24"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001381635"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
56 1 havana CDS 4119668 4119712 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "24"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
57 1 havana exon 4092617 4092780 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "25"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001378903"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
58 1 havana CDS 4092617 4092780 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "25"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
59 1 havana exon 4041888 4042107 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "26"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001380904"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
60 1 havana CDS 4041888 4042107 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "26"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
61 1 havana exon 4024736 4024890 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "27"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001380986"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
62 1 havana CDS 4024736 4024890 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "27"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
63 1 havana exon 4019070 4019148 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "28"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001378728"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
64 1 havana CDS 4019070 4019148 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "28"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
65 1 havana exon 4007656 4007737 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "29"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001381361"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
66 1 havana CDS 4007656 4007737 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "29"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
67 1 havana exon 3999557 3999617 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "30"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; exon_id "ENSMUSE00001378424"; exon_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
68 1 havana CDS 3999560 3999617 . - 1 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "30"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; protein_id "ENSMUSP00000146439"; protein_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
69 1 havana stop_codon 3999557 3999559 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; exon_number "30"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
70 1 havana five_prime_utr 4409188 4409241 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208660"; transcript_version "1"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000145515"; havana_transcript_version "1"; tag "basic";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
71 1 havana transcript 4290846 4409241 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208793"; transcript_version "1"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-002"; transcript_source "havana"; transcript_biotype "retained_intron"; havana_transcript "OTTMUST00000127194"; havana_transcript_version "2";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
72 1 havana exon 4409170 4409241 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208793"; transcript_version "1"; exon_number "1"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-002"; transcript_source "havana"; transcript_biotype "retained_intron"; havana_transcript "OTTMUST00000127194"; havana_transcript_version "2"; exon_id "ENSMUSE00001379779"; exon_version "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
73 1 havana exon 4352202 4352837 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208793"; transcript_version "1"; exon_number "2"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-002"; transcript_source "havana"; transcript_biotype "retained_intron"; havana_transcript "OTTMUST00000127194"; havana_transcript_version "2"; exon_id "ENSMUSE00001377400"; exon_version "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
74 1 havana exon 4351910 4352081 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208793"; transcript_version "1"; exon_number "3"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-002"; transcript_source "havana"; transcript_biotype "retained_intron"; havana_transcript "OTTMUST00000127194"; havana_transcript_version "2"; exon_id "ENSMUSE00001380148"; exon_version "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
75 1 havana exon 4290846 4293012 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000208793"; transcript_version "1"; exon_number "4"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-002"; transcript_source "havana"; transcript_biotype "retained_intron"; havana_transcript "OTTMUST00000127194"; havana_transcript_version "2"; exon_id "ENSMUSE00001345123"; exon_version "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
76 1 ensembl_havana transcript 4344146 4360314 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
77 1 ensembl_havana exon 4360200 4360314 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; exon_number "1"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; exon_id "ENSMUSE00000390984"; exon_version "5"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
78 1 ensembl_havana exon 4352202 4352837 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; exon_number "2"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; exon_id "ENSMUSE00000232073"; exon_version "3"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
79 1 ensembl_havana CDS 4352202 4352825 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; exon_number "2"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; protein_id "ENSMUSP00000027032"; protein_version "4"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
80 1 ensembl_havana start_codon 4352823 4352825 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; exon_number "2"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
81 1 ensembl_havana exon 4351910 4352081 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; exon_number "3"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; exon_id "ENSMUSE00001379531"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
82 1 ensembl_havana CDS 4351910 4352081 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; exon_number "3"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; protein_id "ENSMUSP00000027032"; protein_version "4"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
83 1 ensembl_havana exon 4344146 4350091 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; exon_number "4"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; exon_id "ENSMUSE00000232057"; exon_version "6"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
84 1 ensembl_havana CDS 4344603 4350091 . - 2 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; exon_number "4"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; protein_id "ENSMUSP00000027032"; protein_version "4"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
85 1 ensembl_havana stop_codon 4344600 4344602 . - 0 gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; exon_number "4"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
86 1 ensembl_havana five_prime_utr 4360200 4360314 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
87 1 ensembl_havana five_prime_utr 4352826 4352837 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
88 1 ensembl_havana three_prime_utr 4344146 4344599 . - . gene_id "ENSMUSG00000025900"; gene_version "11"; transcript_id "ENSMUST00000027032"; transcript_version "5"; gene_name "Rp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000049985"; havana_gene_version "3"; transcript_name "Rp1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS14804"; havana_transcript "OTTMUST00000127195"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
89 2 ensembl_havana gene 180024987 180035465 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
90 2 ensembl_havana transcript 180024987 180035461 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
91 2 ensembl_havana exon 180024987 180025312 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "1"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; exon_id "ENSMUSE00001083143"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
92 2 ensembl_havana CDS 180025186 180025312 . + 0 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "1"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; protein_id "ENSMUSP00000055036"; protein_version "5"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
93 2 ensembl_havana start_codon 180025186 180025188 . + 0 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "1"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
94 2 ensembl_havana exon 180026635 180026798 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "2"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; exon_id "ENSMUSE00001071834"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
95 2 ensembl_havana CDS 180026635 180026798 . + 2 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "2"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; protein_id "ENSMUSP00000055036"; protein_version "5"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
96 2 ensembl_havana exon 180027900 180028035 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "3"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; exon_id "ENSMUSE00001260227"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
97 2 ensembl_havana CDS 180027900 180028035 . + 0 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "3"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; protein_id "ENSMUSP00000055036"; protein_version "5"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
98 2 ensembl_havana exon 180031361 180031528 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "4"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; exon_id "ENSMUSE00001220044"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
99 2 ensembl_havana CDS 180031361 180031528 . + 2 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "4"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; protein_id "ENSMUSP00000055036"; protein_version "5"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
100 2 ensembl_havana exon 180031794 180031871 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "5"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; exon_id "ENSMUSE00000227860"; exon_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
101 2 ensembl_havana CDS 180031794 180031871 . + 2 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "5"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; protein_id "ENSMUSP00000055036"; protein_version "5"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
102 2 ensembl_havana exon 180032061 180032222 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "6"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; exon_id "ENSMUSE00001213901"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
103 2 ensembl_havana CDS 180032061 180032222 . + 2 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "6"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; protein_id "ENSMUSP00000055036"; protein_version "5"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
104 2 ensembl_havana exon 180032501 180032651 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "7"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; exon_id "ENSMUSE00001207773"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
105 2 ensembl_havana CDS 180032501 180032651 . + 2 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "7"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; protein_id "ENSMUSP00000055036"; protein_version "5"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
106 2 ensembl_havana exon 180033686 180033870 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "8"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; exon_id "ENSMUSE00000371542"; exon_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
107 2 ensembl_havana CDS 180033686 180033854 . + 1 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "8"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; protein_id "ENSMUSP00000055036"; protein_version "5"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
108 2 ensembl_havana stop_codon 180033855 180033857 . + 0 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "8"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
109 2 ensembl_havana exon 180034298 180035461 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; exon_number "9"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; exon_id "ENSMUSE00000833597"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
110 2 ensembl_havana five_prime_utr 180024987 180025185 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
111 2 ensembl_havana three_prime_utr 180033858 180033870 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
112 2 ensembl_havana three_prime_utr 180034298 180035461 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000055485"; transcript_version "11"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS17165"; havana_transcript "OTTMUST00000038901"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
113 2 havana transcript 180026398 180035465 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
114 2 havana exon 180026398 180026798 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "1"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; exon_id "ENSMUSE00000591628"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
115 2 havana exon 180027900 180028035 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "2"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; exon_id "ENSMUSE00001301698"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
116 2 havana CDS 180027966 180028035 . + 0 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "2"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; protein_id "ENSMUSP00000062519"; protein_version "4"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
117 2 havana start_codon 180027966 180027968 . + 0 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "2"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
118 2 havana exon 180028958 180029074 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "3"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; exon_id "ENSMUSE00000356208"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
119 2 havana CDS 180028958 180029074 . + 2 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "3"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; protein_id "ENSMUSP00000062519"; protein_version "4"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
120 2 havana exon 180031361 180031528 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "4"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; exon_id "ENSMUSE00001220044"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
121 2 havana CDS 180031361 180031528 . + 2 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "4"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; protein_id "ENSMUSP00000062519"; protein_version "4"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
122 2 havana exon 180031794 180031871 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "5"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; exon_id "ENSMUSE00000227860"; exon_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
123 2 havana CDS 180031794 180031871 . + 2 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "5"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; protein_id "ENSMUSP00000062519"; protein_version "4"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
124 2 havana exon 180032061 180032222 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "6"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; exon_id "ENSMUSE00001213901"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
125 2 havana CDS 180032061 180032222 . + 2 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "6"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; protein_id "ENSMUSP00000062519"; protein_version "4"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
126 2 havana exon 180032501 180032651 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "7"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; exon_id "ENSMUSE00001207773"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
127 2 havana CDS 180032501 180032651 . + 2 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "7"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; protein_id "ENSMUSP00000062519"; protein_version "4"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
128 2 havana exon 180033686 180033870 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "8"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; exon_id "ENSMUSE00000371542"; exon_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
129 2 havana CDS 180033686 180033854 . + 1 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "8"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; protein_id "ENSMUSP00000062519"; protein_version "4"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
130 2 havana stop_codon 180033855 180033857 . + 0 gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "8"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
131 2 havana exon 180034298 180035465 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; exon_number "9"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; exon_id "ENSMUSE00000791446"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
132 2 havana five_prime_utr 180026398 180026798 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
133 2 havana five_prime_utr 180027900 180027965 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
134 2 havana three_prime_utr 180033858 180033870 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
135 2 havana three_prime_utr 180034298 180035465 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000058764"; transcript_version "5"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-002"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000038902"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
136 2 havana transcript 180027909 180033810 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000140257"; transcript_version "1"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-003"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000038903"; havana_transcript_version "1"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
137 2 havana exon 180027909 180028035 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000140257"; transcript_version "1"; exon_number "1"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-003"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000038903"; havana_transcript_version "1"; exon_id "ENSMUSE00000757545"; exon_version "1"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
138 2 havana exon 180031361 180031528 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000140257"; transcript_version "1"; exon_number "2"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-003"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000038903"; havana_transcript_version "1"; exon_id "ENSMUSE00001287056"; exon_version "1"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
139 2 havana exon 180032061 180032222 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000140257"; transcript_version "1"; exon_number "3"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-003"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000038903"; havana_transcript_version "1"; exon_id "ENSMUSE00001265842"; exon_version "1"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
140 2 havana exon 180032501 180032651 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000140257"; transcript_version "1"; exon_number "4"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-003"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000038903"; havana_transcript_version "1"; exon_id "ENSMUSE00001214894"; exon_version "1"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
141 2 havana exon 180033686 180033810 . + . gene_id "ENSMUSG00000039108"; gene_version "14"; transcript_id "ENSMUST00000140257"; transcript_version "1"; exon_number "5"; gene_name "Lsm14b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016234"; havana_gene_version "3"; transcript_name "Lsm14b-003"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000038903"; havana_transcript_version "1"; exon_id "ENSMUSE00000781779"; exon_version "1"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
142 11 ensembl_havana gene 4873951 4894200 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
143 11 ensembl_havana transcript 4873951 4894200 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
144 11 ensembl_havana exon 4873951 4874103 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; exon_id "ENSMUSE00000802397"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
145 11 ensembl_havana CDS 4874006 4874103 . + 0 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; protein_id "ENSMUSP00000049338"; protein_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
146 11 ensembl_havana start_codon 4874006 4874008 . + 0 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
147 11 ensembl_havana exon 4883368 4883495 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "2"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; exon_id "ENSMUSE00001303033"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
148 11 ensembl_havana CDS 4883368 4883495 . + 1 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "2"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; protein_id "ENSMUSP00000049338"; protein_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
149 11 ensembl_havana exon 4883726 4883771 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "3"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; exon_id "ENSMUSE00001260957"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
150 11 ensembl_havana CDS 4883726 4883771 . + 2 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "3"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; protein_id "ENSMUSP00000049338"; protein_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
151 11 ensembl_havana exon 4884022 4884116 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "4"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; exon_id "ENSMUSE00001230977"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
152 11 ensembl_havana CDS 4884022 4884116 . + 1 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "4"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; protein_id "ENSMUSP00000049338"; protein_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
153 11 ensembl_havana exon 4888880 4888950 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "5"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; exon_id "ENSMUSE00001207460"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
154 11 ensembl_havana CDS 4888880 4888950 . + 2 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "5"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; protein_id "ENSMUSP00000049338"; protein_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
155 11 ensembl_havana exon 4889097 4889237 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "6"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; exon_id "ENSMUSE00001235423"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
156 11 ensembl_havana CDS 4889097 4889237 . + 0 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "6"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; protein_id "ENSMUSP00000049338"; protein_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
157 11 ensembl_havana exon 4889533 4889564 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; exon_id "ENSMUSE00001306295"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
158 11 ensembl_havana CDS 4889533 4889564 . + 0 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; protein_id "ENSMUSP00000049338"; protein_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
159 11 ensembl_havana exon 4889892 4889986 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "8"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; exon_id "ENSMUSE00001215642"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
160 11 ensembl_havana CDS 4889892 4889986 . + 1 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "8"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; protein_id "ENSMUSP00000049338"; protein_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
161 11 ensembl_havana exon 4891403 4891486 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "9"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; exon_id "ENSMUSE00001285170"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
162 11 ensembl_havana CDS 4891403 4891486 . + 2 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "9"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; protein_id "ENSMUSP00000049338"; protein_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
163 11 ensembl_havana exon 4893120 4894200 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "10"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; exon_id "ENSMUSE00000307866"; exon_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
164 11 ensembl_havana CDS 4893120 4893181 . + 2 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "10"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; protein_id "ENSMUSP00000049338"; protein_version "2"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
165 11 ensembl_havana stop_codon 4893182 4893184 . + 0 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; exon_number "10"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
166 11 ensembl_havana five_prime_utr 4873951 4874005 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
167 11 ensembl_havana three_prime_utr 4893185 4894200 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000038570"; transcript_version "8"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS24392"; havana_transcript "OTTMUST00000011320"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
168 11 havana transcript 4873999 4893617 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
169 11 havana exon 4873999 4874103 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; exon_id "ENSMUSE00001078255"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
170 11 havana CDS 4874006 4874103 . + 0 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; protein_id "ENSMUSP00000117760"; protein_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
171 11 havana start_codon 4874006 4874008 . + 0 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
172 11 havana exon 4882901 4883171 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "2"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; exon_id "ENSMUSE00001067865"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
173 11 havana CDS 4882901 4882985 . + 1 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "2"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; protein_id "ENSMUSP00000117760"; protein_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
174 11 havana stop_codon 4882986 4882988 . + 0 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "2"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
175 11 havana exon 4883368 4883495 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "3"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; exon_id "ENSMUSE00001244170"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
176 11 havana exon 4883726 4883771 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "4"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; exon_id "ENSMUSE00001283021"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
177 11 havana exon 4884022 4884116 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "5"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; exon_id "ENSMUSE00001310154"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
178 11 havana exon 4888880 4888950 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "6"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; exon_id "ENSMUSE00001274768"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
179 11 havana exon 4889097 4889237 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; exon_id "ENSMUSE00001231554"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
180 11 havana exon 4889533 4889564 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "8"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; exon_id "ENSMUSE00001240834"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
181 11 havana exon 4889892 4889986 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "9"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; exon_id "ENSMUSE00001277403"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
182 11 havana exon 4891403 4891486 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "10"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; exon_id "ENSMUSE00001261240"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
183 11 havana exon 4893120 4893617 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; exon_number "11"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; exon_id "ENSMUSE00001022756"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
184 11 havana five_prime_utr 4873999 4874005 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
185 11 havana three_prime_utr 4882989 4883171 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
186 11 havana three_prime_utr 4883368 4883495 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
187 11 havana three_prime_utr 4883726 4883771 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
188 11 havana three_prime_utr 4884022 4884116 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
189 11 havana three_prime_utr 4888880 4888950 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
190 11 havana three_prime_utr 4889097 4889237 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
191 11 havana three_prime_utr 4889533 4889564 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
192 11 havana three_prime_utr 4889892 4889986 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
193 11 havana three_prime_utr 4891403 4891486 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
194 11 havana three_prime_utr 4893120 4893617 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000136552"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-002"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000011321"; havana_transcript_version "2"; tag "mRNA_end_NF"; transcript_support_level "1";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
195 11 havana transcript 4874005 4884404 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000135405"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-006"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000061468"; havana_transcript_version "1"; transcript_support_level "2";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
196 11 havana exon 4874005 4874103 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000135405"; transcript_version "7"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-006"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000061468"; havana_transcript_version "1"; exon_id "ENSMUSE00000758406"; exon_version "1"; transcript_support_level "2";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
197 11 havana exon 4883368 4883495 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000135405"; transcript_version "7"; exon_number "2"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-006"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000061468"; havana_transcript_version "1"; exon_id "ENSMUSE00001244170"; exon_version "1"; transcript_support_level "2";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
198 11 havana exon 4883726 4883771 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000135405"; transcript_version "7"; exon_number "3"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-006"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000061468"; havana_transcript_version "1"; exon_id "ENSMUSE00001283021"; exon_version "1"; transcript_support_level "2";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
199 11 havana exon 4884022 4884404 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000135405"; transcript_version "7"; exon_number "4"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-006"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000061468"; havana_transcript_version "1"; exon_id "ENSMUSE00000774709"; exon_version "1"; transcript_support_level "2";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
200 11 havana transcript 4883194 4889131 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
201 11 havana exon 4883194 4883253 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; exon_id "ENSMUSE00000732339"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
202 11 havana CDS 4883219 4883253 . + 0 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; protein_id "ENSMUSP00000122885"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
203 11 havana start_codon 4883219 4883221 . + 0 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
204 11 havana exon 4883368 4883495 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "2"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; exon_id "ENSMUSE00001303033"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
205 11 havana CDS 4883368 4883495 . + 1 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "2"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; protein_id "ENSMUSP00000122885"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
206 11 havana exon 4883726 4883771 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "3"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; exon_id "ENSMUSE00001260957"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
207 11 havana CDS 4883726 4883771 . + 2 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "3"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; protein_id "ENSMUSP00000122885"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
208 11 havana exon 4884022 4884116 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "4"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; exon_id "ENSMUSE00001230977"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
209 11 havana CDS 4884022 4884116 . + 1 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "4"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; protein_id "ENSMUSP00000122885"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
210 11 havana exon 4888880 4888950 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "5"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; exon_id "ENSMUSE00001207460"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
211 11 havana CDS 4888880 4888950 . + 2 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "5"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; protein_id "ENSMUSP00000122885"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
212 11 havana exon 4889097 4889131 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "6"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; exon_id "ENSMUSE00000789146"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
213 11 havana CDS 4889097 4889131 . + 0 gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; exon_number "6"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; protein_id "ENSMUSP00000122885"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
214 11 havana five_prime_utr 4883194 4883218 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000139737"; transcript_version "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-003"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000011322"; havana_transcript_version "2"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
215 11 havana transcript 4883206 4889973 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000149603"; transcript_version "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-004"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011323"; havana_transcript_version "1"; transcript_support_level "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
216 11 havana exon 4883206 4883253 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000149603"; transcript_version "7"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-004"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011323"; havana_transcript_version "1"; exon_id "ENSMUSE00000799326"; exon_version "1"; transcript_support_level "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
217 11 havana exon 4883368 4883495 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000149603"; transcript_version "7"; exon_number "2"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-004"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011323"; havana_transcript_version "1"; exon_id "ENSMUSE00001244170"; exon_version "1"; transcript_support_level "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
218 11 havana exon 4883726 4883771 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000149603"; transcript_version "7"; exon_number "3"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-004"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011323"; havana_transcript_version "1"; exon_id "ENSMUSE00001283021"; exon_version "1"; transcript_support_level "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
219 11 havana exon 4884022 4884116 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000149603"; transcript_version "7"; exon_number "4"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-004"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011323"; havana_transcript_version "1"; exon_id "ENSMUSE00001310154"; exon_version "1"; transcript_support_level "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
220 11 havana exon 4889097 4889237 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000149603"; transcript_version "7"; exon_number "5"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-004"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011323"; havana_transcript_version "1"; exon_id "ENSMUSE00001231554"; exon_version "1"; transcript_support_level "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
221 11 havana exon 4889533 4889564 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000149603"; transcript_version "7"; exon_number "6"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-004"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011323"; havana_transcript_version "1"; exon_id "ENSMUSE00001240834"; exon_version "1"; transcript_support_level "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
222 11 havana exon 4889892 4889973 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000149603"; transcript_version "7"; exon_number "7"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-004"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011323"; havana_transcript_version "1"; exon_id "ENSMUSE00000769299"; exon_version "1"; transcript_support_level "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
223 11 havana transcript 4883264 4884116 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000141269"; transcript_version "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-005"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011324"; havana_transcript_version "1"; transcript_support_level "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
224 11 havana exon 4883264 4883495 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000141269"; transcript_version "1"; exon_number "1"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-005"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011324"; havana_transcript_version "1"; exon_id "ENSMUSE00000736166"; exon_version "1"; transcript_support_level "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
225 11 havana exon 4883726 4883771 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000141269"; transcript_version "1"; exon_number "2"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-005"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011324"; havana_transcript_version "1"; exon_id "ENSMUSE00001283021"; exon_version "1"; transcript_support_level "3";
8ba71aead5bc planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty
jjohnson
parents:
diff changeset
226 11 havana exon 4884022 4884116 . + . gene_id "ENSMUSG00000034285"; gene_version "15"; transcript_id "ENSMUST00000141269"; transcript_version "1"; exon_number "3"; gene_name "Nipsnap1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000005074"; havana_gene_version "3"; transcript_name "Nipsnap1-005"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000011324"; havana_transcript_version "1"; exon_id "ENSMUSE00001310154"; exon_version "1"; transcript_support_level "3";