Mercurial > repos > jjohnson > augustus_dep
annotate tool_dependencies.xml @ 4:06b5da1079d8 draft
Revise tool_dependencies.xml to handle augustus.2.6.1 being packaged in current dir
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 23 Oct 2012 10:07:28 -0500 |
| parents | 75675bc1aafb |
| children | 6d288b228c6d |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 | 3 <package name="augustus" version="2.6.1"> |
| 0 | 4 <install version="1.0"> |
| 5 <actions> | |
|
4
06b5da1079d8
Revise tool_dependencies.xml to handle augustus.2.6.1 being packaged in current dir
Jim Johnson <jj@umn.edu>
parents:
3
diff
changeset
|
6 <action type="shell_command">wget http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action> |
|
06b5da1079d8
Revise tool_dependencies.xml to handle augustus.2.6.1 being packaged in current dir
Jim Johnson <jj@umn.edu>
parents:
3
diff
changeset
|
7 <!-- with the first command of with type shell_command a dir will be created with the package name, and we'll operate from there. --> |
|
06b5da1079d8
Revise tool_dependencies.xml to handle augustus.2.6.1 being packaged in current dir
Jim Johnson <jj@umn.edu>
parents:
3
diff
changeset
|
8 <action type="shell_command">tar zxf ../augustus.2.6.1.tar.gz</action> |
| 0 | 9 <action type="shell_command">make</action> |
| 2 | 10 <action type="move_directory_files"> |
| 11 <source_directory>bin</source_directory> | |
| 12 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
| 13 </action> | |
| 14 <action type="move_directory_files"> | |
| 15 <source_directory>scripts</source_directory> | |
| 16 <destination_directory>$INSTALL_DIR/scripts</destination_directory> | |
| 17 </action> | |
| 18 <action type="move_directory_files"> | |
| 19 <source_directory>config</source_directory> | |
| 20 <destination_directory>$INSTALL_DIR/config</destination_directory> | |
| 21 </action> | |
| 0 | 22 <action type="set_environment"> |
| 3 | 23 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable> |
| 24 </action> | |
| 25 <action type="set_environment"> | |
| 0 | 26 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 27 </action> | |
| 28 <action type="set_environment"> | |
| 29 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable> | |
| 30 </action> | |
| 31 </actions> | |
| 32 </install> | |
| 33 <readme>http://augustus.gobics.de/binaries/README.TXT</readme> | |
| 34 </package> | |
| 35 </tool_dependency> | |
| 36 |