Mercurial > repos > jdv > porechop

diff porechop.xml @ 3:80408ff0c1f5 draft
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit 2a0c81f39a2d50819a327cb889f336b136612d60
author: jdv
date: Sat, 14 Oct 2017 22:23:22 -0400
parents: f84a33bc5c3e
children: 40232a4e5a04
--- a/porechop.xml	Sat Oct 14 10:52:30 2017 -0400
+++ b/porechop.xml	Sat Oct 14 22:23:22 2017 -0400
@@ -78,6 +78,9 @@
 
         #end if
 
+        | perl $__tool_directory__/porechop_summarize.pl
+        > $result_table
+
     ]]>
     </command>
 
@@ -139,11 +142,6 @@
 
     <outputs>
 
-        <collection type="list" name="output">
-            <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fastqsanger" />
-        </collection>
-
-
         <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string}">
             <filter>out_format == 'fastq'</filter>
             <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fastqsanger" />
@@ -153,6 +151,7 @@
             <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fasta" />
         </collection>
 
+        <data format="table" name="result_table" label="${tool.name} on ${on_string} (summary)" /> 
     </outputs>
 
     <!-- ***************************************************************** -->