Mercurial > repos > jdv > porechop

comparison porechop.xml @ 3:80408ff0c1f5 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit 2a0c81f39a2d50819a327cb889f336b136612d60
author jdv
date Sat, 14 Oct 2017 22:23:22 -0400
parents f84a33bc5c3e
children 40232a4e5a04
comparison
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2:f84a33bc5c3e 3:80408ff0c1f5
75 75
76 #else: 76 #else:
77 --untrimmed 77 --untrimmed
78 78
79 #end if 79 #end if
80
81 | perl $__tool_directory__/porechop_summarize.pl
82 > $result_table
80 83
81 ]]> 84 ]]>
82 </command> 85 </command>
83 86
84 <!-- ***************************************************************** --> 87 <!-- ***************************************************************** -->
137 140
138 <!-- ***************************************************************** --> 141 <!-- ***************************************************************** -->
139 142
140 <outputs> 143 <outputs>
141 144
142 <collection type="list" name="output">
143 <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fastqsanger" />
144 </collection>
145
146
147 <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string}"> 145 <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string}">
148 <filter>out_format == 'fastq'</filter> 146 <filter>out_format == 'fastq'</filter>
149 <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fastqsanger" /> 147 <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fastqsanger" />
150 </collection> 148 </collection>
151 <collection type="list" name="output_collection_fasta" label="${tool.name} on ${on_string}"> 149 <collection type="list" name="output_collection_fasta" label="${tool.name} on ${on_string}">
152 <filter>out_format == 'fasta'</filter> 150 <filter>out_format == 'fasta'</filter>
153 <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fasta" /> 151 <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fasta" />
154 </collection> 152 </collection>
155 153
154 <data format="table" name="result_table" label="${tool.name} on ${on_string} (summary)" />
156 </outputs> 155 </outputs>
157 156
158 <!-- ***************************************************************** --> 157 <!-- ***************************************************************** -->
159 158
160 <tests> 159 <tests>