annotate tool_dependencies.xml @ 0:2602ce9c112c draft default tip

planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
author jdv
date Sat, 26 Aug 2017 02:39:33 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
1 <?xml version="1.0"?>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
2 <tool_dependency>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
3 <package name="porechop" version="0.2.1">
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
4 <install version="1.0">
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
5 <actions_group>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
6 <actions architecture="x86_64" os="linux">
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
7 <action type="download_by_url" sha256sum="c82331531eb25650d59d606527b7357c45791a3c2fd5b75fc2fe98299bb81b38">https://github.com/jvolkening/galaxy-tools/raw/master/binaries/porechop_0_2_1_Linux_x86_64.tar.gz</action>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
8 <action type="move_directory_files">
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
9 <source_directory>.</source_directory>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
10 <destination_directory>$INSTALL_DIR</destination_directory>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
11 </action>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
12 </actions>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
13 <action type="set_environment">
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
14 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
15 </action>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
16 </actions_group>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
17 </install>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
18 <readme>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
19 <![CDATA[
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
20 GOTTCHA is an application of a novel, gene-independent and signature-based
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
21 metagenomic taxonomic profiling method with significantly smaller false
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
22 discovery rates (FDR) that is laptop deployable. Our algorithm was tested and
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
23 validated on twenty synthetic and mock datasets ranging in community
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
24 composition and complexity, was applied successfully to data generated from
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
25 spiked environmental and clinical samples, and robustly demonstrates superior
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
26 performance compared with other available tools.
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
27 ]]> </readme>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
28 </package>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
29 </tool_dependency>
2602ce9c112c planemo upload commit d09a39cd41aca0dadb42216cd4d5ec280a8ce4c4
jdv
parents:
diff changeset
30