Mercurial > repos > jdv > nanopolish

changeset 1:a5db82bec597 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopolish commit 669955c21a5e770a6777269de6b1d2c375a704e3
author jdv
date Fri, 08 Sep 2017 18:12:54 -0400
parents 2136c2725fc4
children e4b6d4a53f2e
files nanopolish_extract.xml nanopolish_variants.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/nanopolish_extract.xml	Wed Sep 06 12:15:45 2017 -0400
+++ b/nanopolish_extract.xml	Fri Sep 08 18:12:54 2017 -0400
@@ -28,7 +28,7 @@
 
     <inputs>
 
-        <param name="input" type="data" format="fast5_archive" label="Input reads" />
+        <param name="input" type="data" format="fast5.tar" label="Input reads" />
         <param name="out_format" type="select" label="Output format">
             <option value="fastq" selected="true">fastq</option>
             <option value="fasta">fasta</option>
@@ -52,7 +52,7 @@
 
     <tests>
         <test>
-            <param name="input" value="test_data.fast5.tar.gz" ftype="fast5_archive" />
+            <param name="input" value="test_data.fast5.tar.gz" ftype="fast5.tar.gz" />
             <output name="output" file="test_data.fastq" compare="sim_size" delta="0"/>
         </test>
     </tests>
--- a/nanopolish_variants.xml	Wed Sep 06 12:15:45 2017 -0400
+++ b/nanopolish_variants.xml	Fri Sep 08 18:12:54 2017 -0400
@@ -46,7 +46,7 @@
     <inputs>
 
         <param name="input_reads" type="data" format="fasta" label="Input reads (FASTA)" />
-        <param name="input_fast5" type="data" format="fast5_archive" label="Input reads (FAST5)" />
+        <param name="input_fast5" type="data" format="fast5.tar" label="Input reads (FAST5)" />
         <param name="input_bam"   type="data" format="bam"   label="Alignment" />
         <param name="input_ref"   type="data" format="fasta" label="Reference" />
         <param name="min_candidate_frequency" type="float" value="0.2" size="5" label="Minimum candidate frequency" />