Mercurial > repos > jdv > nanopolish
view test-data/consensus.vcf @ 12:f64b148e6189 draft default tip
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopolish commit ba4c46d7717e3acd346c9c6bf0bbc9bbecccc190
| author | jdv |
|---|---|
| date | Fri, 09 Mar 2018 21:56:08 -0500 |
| parents | 32cb27adeb34 |
| children |
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##fileformat=VCFv4.2 ##INFO=<ID=TotalReads,Number=1,Type=Integer,Description="The number of event-space reads used to call the variant"> ##INFO=<ID=SupportFraction,Number=1,Type=Float,Description="The fraction of event-space reads that support the variant"> ##INFO=<ID=BaseCalledReadsWithVariant,Number=1,Type=Integer,Description="The number of base-space reads that support the variant"> ##INFO=<ID=BaseCalledFraction,Number=1,Type=Float,Description="The fraction of base-space reads that support the variant"> ##INFO=<ID=AlleleCount,Number=1,Type=Integer,Description="The inferred number of copies of the allele"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample ref 91 . G GA 76.8 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.472064 GT 1 ref 100 . CT C 76.8 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.600762 GT 1 ref 113 . A AG 20.3 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.62332 GT 1 ref 116 . A G 20.3 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.568855 GT 1 ref 142 . C T 28.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.215363 GT 1 ref 254 . A AC 57.6 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.435726 GT 1 ref 456 . CA C 48.4 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.0291696 GT 1 ref 510 . CA C 48.4 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.352106 GT 1 ref 528 . G GA 23.8 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.542136 GT 1 ref 537 . C CA 23.8 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.520509 GT 1 ref 548 . TA T 43.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.299671 GT 1 ref 556 . C A 43.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.120227 GT 1 ref 599 . TC T 21.7 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.0689728 GT 1 ref 638 . GA G 21.7 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.0753427 GT 1 ref 666 . A G 35.1 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.172919 GT 1 ref 667 . T TG 35.1 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.29952 GT 1 ref 683 . A G 39.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.695758 GT 1 ref 694 . G A 39.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.679033 GT 1 ref 713 . G GC 41.5 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.288257 GT 1 ref 728 . CG C 41.5 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.223589 GT 1 ref 742 . G A 41.5 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.455935 GT 1 ref 763 . A G 92.3 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.783764 GT 1 ref 768 . A G 92.3 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.835095 GT 1 ref 770 . C T 92.3 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.605993 GT 1 ref 771 . A G 92.3 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.845481 GT 1 ref 838 . A G 29.3 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.139648 GT 1 ref 841 . G A 29.3 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.366238 GT 1 ref 852 . A AG 37.7 PASS TotalReads=5;AlleleCount=1;SupportFraction=0.796436 GT 1 ref 856 . T TA 37.7 PASS TotalReads=5;AlleleCount=1;SupportFraction=0.874709 GT 1 ref 91 . G GA 78.7 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.50089 GT 1 ref 100 . CT C 78.7 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.374252 GT 1 ref 113 . A AG 20.1 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.635287 GT 1 ref 116 . A G 20.1 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.744199 GT 1 ref 142 . C T 36.6 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.703642 GT 1 ref 254 . A AC 65.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.803838 GT 1 ref 510 . CA C 33.4 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.513822 GT 1 ref 528 . G GAG 24.6 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.408269 GT 1 ref 537 . C CA 24.6 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.338892 GT 1 ref 548 . TA T 46.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.351277 GT 1 ref 556 . C A 46.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.709209 GT 1 ref 666 . A G 47.6 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.829231 GT 1 ref 667 . T TG 47.6 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.6682 GT 1 ref 683 . A G 27.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.88787 GT 1 ref 713 . G GCC 32.2 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.530639 GT 1 ref 763 . A G 89.9 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.774073 GT 1 ref 768 . A G 89.9 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.876258 GT 1 ref 770 . C T 89.9 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.555854 GT 1 ref 771 . A G 89.9 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.852648 GT 1 ref 838 . A G 45.1 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.773069 GT 1 ref 841 . G A 45.1 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.701949 GT 1 ref 852 . A AGA 60.2 PASS TotalReads=5;AlleleCount=1;SupportFraction=0.791628 GT 1 ref 856 . T TA 60.2 PASS TotalReads=5;AlleleCount=1;SupportFraction=0.672761 GT 1 ref 91 . G GA 78.7 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.50089 GT 1 ref 100 . CT C 78.7 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.374252 GT 1 ref 113 . A AG 20.1 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.635287 GT 1 ref 116 . A G 20.1 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.744199 GT 1 ref 142 . C T 36.6 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.703642 GT 1 ref 254 . A AC 65.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.803838 GT 1 ref 510 . CA C 33.4 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.513822 GT 1 ref 528 . G GAG 24.6 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.268594 GT 1 ref 537 . C CA 24.6 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.340399 GT 1 ref 548 . TA T 46.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.351277 GT 1 ref 556 . C A 46.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.709209 GT 1 ref 666 . A G 47.6 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.829231 GT 1 ref 667 . T TG 47.6 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.6682 GT 1 ref 683 . A G 27.0 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.88787 GT 1 ref 713 . G GCC 32.2 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.31882 GT 1 ref 763 . A G 89.9 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.774073 GT 1 ref 768 . A G 89.9 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.876258 GT 1 ref 770 . C T 89.9 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.555854 GT 1 ref 771 . A G 89.9 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.852648 GT 1 ref 838 . A G 45.1 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.773069 GT 1 ref 841 . G A 45.1 PASS TotalReads=8;AlleleCount=1;SupportFraction=0.701949 GT 1 ref 852 . A AGA 60.2 PASS TotalReads=5;AlleleCount=1;SupportFraction=0.752959 GT 1 ref 856 . T TA 60.2 PASS TotalReads=5;AlleleCount=1;SupportFraction=0.672828 GT 1