Mercurial > repos > jdv > nanopolish

comparison nanopolish_variants.xml @ 1:a5db82bec597 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopolish commit 669955c21a5e770a6777269de6b1d2c375a704e3
author jdv
date Fri, 08 Sep 2017 18:12:54 -0400
parents 2136c2725fc4
children a1d433401bc2
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0:2136c2725fc4 1:a5db82bec597
44 <!-- ***************************************************************** --> 44 <!-- ***************************************************************** -->
45 45
46 <inputs> 46 <inputs>
47 47
48 <param name="input_reads" type="data" format="fasta" label="Input reads (FASTA)" /> 48 <param name="input_reads" type="data" format="fasta" label="Input reads (FASTA)" />
49 <param name="input_fast5" type="data" format="fast5_archive" label="Input reads (FAST5)" /> 49 <param name="input_fast5" type="data" format="fast5.tar" label="Input reads (FAST5)" />
50 <param name="input_bam" type="data" format="bam" label="Alignment" /> 50 <param name="input_bam" type="data" format="bam" label="Alignment" />
51 <param name="input_ref" type="data" format="fasta" label="Reference" /> 51 <param name="input_ref" type="data" format="fasta" label="Reference" />
52 <param name="min_candidate_frequency" type="float" value="0.2" size="5" label="Minimum candidate frequency" /> 52 <param name="min_candidate_frequency" type="float" value="0.2" size="5" label="Minimum candidate frequency" />
53 <param name="min_candidate_depth" type="integer" min="1" value="20" size="5" label="Minimum candidate depth" /> 53 <param name="min_candidate_depth" type="integer" min="1" value="20" size="5" label="Minimum candidate depth" />
54 <param name="max_haplotypes" type="integer" min="0" value="1000" size="5" label="Maximum haplotype combinations" /> 54 <param name="max_haplotypes" type="integer" min="0" value="1000" size="5" label="Maximum haplotype combinations" />