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annotate test-data/test_01.full.tsv @ 0:2569a83977f5 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
author jdv
date Mon, 30 Jan 2017 19:07:21 -0500
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2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
1 LEVEL TAXA REL_ABUNDANCE NUM_SUBRANKS GPROJ_ENTRIES LINEAR_LENGTH UNIQUE_DB_LENGTH FULL_REFDB_LENGTH LINEAR_COV HIT_COUNT HIT_COUNT_PLASMID READ_COUNT FULL_HIT_COUNT TOTAL_BP_MAPPED LINEAR_DOC UREF_DOC UREF_CMAX FRAC_HITS_POSSIBLE FRAC_BASES_POSSIBLE MEAN_HIT_LENGTH MEAN_LINEAR_HIT_LENGTH best_SUBRANK best_NUM_SUBRANKS best_GPROJ_ENTRIES best_LINEAR_LENGTH best_UNIQUE_DB_LENGTH best_FULL_REFDB_LENGTH best_LINEAR_COV best_HIT_COUNT best_FULL_HIT_COUNT best_TOTAL_BP_MAPPED best_LINEAR_DOC best_UREF_DOC best_UREF_CMAX best_FRAC_HITS_POSSIBLE best_FRAC_BASES_POSSIBLE best_MEAN_HIT_LENGTH best_MEAN_LINEAR_HIT_LENGTH CONTIG_COUNT CONTIG_MEAN_LEN CONTIG_STDEV_LEN CONTIG_MINLEN CONTIG_MAXLEN CONTIG_HISTOGRAM(LEN:FREQ) CONTIG_N50:N60:N70:N80:N90:N95 REL_ABUNDANCE SCALED_REL_ABUNDANCE
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
2 phylum Unassigned phylum - Unassigned class - Mononegavirales 0.6663 1 1 2468 15186 15186 0.162518108784407 144 0 113 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.22 17.14 Unassigned class - Mononegavirales 1 1 2468 15186 15186 0.162518108784407 144 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.215277777777779 17.138888888888889 48 51.4 25.4 30 150 150:1,106:1,101:1,89:1,75:2,72:1,71:3,70:3,68:1,61:1,60:2,58:1,57:1,52:1,51:1,50:1,46:1,44:1,43:1,41:1,37:1,36:1,35:1,33:1,32:2,31:1,30:15 60:52:43:32:30:30 1.000000000000000 1.000000000000000
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
3 phylum Unassigned phylum - Unassigned class - Herpesvirales 0.3337 1 1 420 177874 177874 0.002361221988599 12 0 3 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.00 35.00 Unassigned class - Herpesvirales 1 1 420 177874 177874 0.002361221988599 12 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.000000000000000 35.000000000000000 4 105.0 43.6 50 140 140:2,90:1,50:1 140:140:90:90:50:50 filtered filtered
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
4 class Unassigned class - Mononegavirales 0.6663 1 1 2468 15186 15186 0.162518108784407 144 0 113 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.22 17.14 Mononegavirales 1 1 2468 15186 15186 0.162518108784407 144 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.215277777777779 17.138888888888889 48 51.4 25.4 30 150 150:1,106:1,101:1,89:1,75:2,72:1,71:3,70:3,68:1,61:1,60:2,58:1,57:1,52:1,51:1,50:1,46:1,44:1,43:1,41:1,37:1,36:1,35:1,33:1,32:2,31:1,30:15 60:52:43:32:30:30 1.000000000000000 1.000000000000000
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
5 class Unassigned class - Herpesvirales 0.3337 1 1 420 177874 177874 0.002361221988599 12 0 3 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.00 35.00 Herpesvirales 1 1 420 177874 177874 0.002361221988599 12 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.000000000000000 35.000000000000000 4 105.0 43.6 50 140 140:2,90:1,50:1 140:140:90:90:50:50 filtered filtered
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
6 order Mononegavirales 0.6663 1 1 2468 15186 15186 0.162518108784407 144 0 113 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.22 17.14 Paramyxoviridae 1 1 2468 15186 15186 0.162518108784407 144 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.215277777777779 17.138888888888889 48 51.4 25.4 30 150 150:1,106:1,101:1,89:1,75:2,72:1,71:3,70:3,68:1,61:1,60:2,58:1,57:1,52:1,51:1,50:1,46:1,44:1,43:1,41:1,37:1,36:1,35:1,33:1,32:2,31:1,30:15 60:52:43:32:30:30 1.000000000000000 1.000000000000000
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
7 order Herpesvirales 0.3337 1 1 420 177874 177874 0.002361221988599 12 0 3 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.00 35.00 Herpesviridae 1 1 420 177874 177874 0.002361221988599 12 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.000000000000000 35.000000000000000 4 105.0 43.6 50 140 140:2,90:1,50:1 140:140:90:90:50:50 filtered filtered
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
8 family Paramyxoviridae 0.6663 1 1 2468 15186 15186 0.162518108784407 144 0 113 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.22 17.14 Avulavirus 1 1 2468 15186 15186 0.162518108784407 144 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.215277777777779 17.138888888888889 48 51.4 25.4 30 150 150:1,106:1,101:1,89:1,75:2,72:1,71:3,70:3,68:1,61:1,60:2,58:1,57:1,52:1,51:1,50:1,46:1,44:1,43:1,41:1,37:1,36:1,35:1,33:1,32:2,31:1,30:15 60:52:43:32:30:30 1.000000000000000 1.000000000000000
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
9 family Herpesviridae 0.3337 1 1 420 177874 177874 0.002361221988599 12 0 3 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.00 35.00 Mardivirus 1 1 420 177874 177874 0.002361221988599 12 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.000000000000000 35.000000000000000 4 105.0 43.6 50 140 140:2,90:1,50:1 140:140:90:90:50:50 filtered filtered
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
10 genus Avulavirus 0.6663 1 1 2468 15186 15186 0.162518108784407 144 0 113 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.22 17.14 Newcastle disease virus 1 1 2468 15186 15186 0.162518108784407 144 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.215277777777779 17.138888888888889 48 51.4 25.4 30 150 150:1,106:1,101:1,89:1,75:2,72:1,71:3,70:3,68:1,61:1,60:2,58:1,57:1,52:1,51:1,50:1,46:1,44:1,43:1,41:1,37:1,36:1,35:1,33:1,32:2,31:1,30:15 60:52:43:32:30:30 1.000000000000000 1.000000000000000
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
11 genus Mardivirus 0.3337 1 1 420 177874 177874 0.002361221988599 12 0 3 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.00 35.00 Gallid alphaherpesvirus 2 1 1 420 177874 177874 0.002361221988599 12 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.000000000000000 35.000000000000000 4 105.0 43.6 50 140 140:2,90:1,50:1 140:140:90:90:50:50 filtered filtered
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
12 species Newcastle disease virus 0.6663 1 1 2468 15186 15186 0.162518108784407 144 0 113 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.22 17.14 Newcastle disease virus B1 1 1 2468 15186 15186 0.162518108784407 144 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.215277777777779 17.138888888888889 48 51.4 25.4 30 150 150:1,106:1,101:1,89:1,75:2,72:1,71:3,70:3,68:1,61:1,60:2,58:1,57:1,52:1,51:1,50:1,46:1,44:1,43:1,41:1,37:1,36:1,35:1,33:1,32:2,31:1,30:15 60:52:43:32:30:30 1.000000000000000 1.000000000000000
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
13 species Gallid alphaherpesvirus 2 0.3337 1 1 420 177874 177874 0.002361221988599 12 0 3 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.00 35.00 Gallid herpesvirus 2 1 1 420 177874 177874 0.002361221988599 12 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.000000000000000 35.000000000000000 4 105.0 43.6 50 140 140:2,90:1,50:1 140:140:90:90:50:50 filtered filtered
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
14 strain Newcastle disease virus B1 0.6663 1 1 2468 15186 15186 0.162518108784407 144 0 113 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.22 17.14 11545722 0 0 2468 15186 15186 0.162518108784407 144 0 4927 1.996353322528363 0.324443566442776 2.629000395100751 0.117455138662316 0.123409478008216 34.215277777777779 17.138888888888889 48 51.4 25.4 30 150 150:1,106:1,101:1,89:1,75:2,72:1,71:3,70:3,68:1,61:1,60:2,58:1,57:1,52:1,51:1,50:1,46:1,44:1,43:1,41:1,37:1,36:1,35:1,33:1,32:2,31:1,30:15 60:52:43:32:30:30 1.000000000000000 1.000000000000000
2569a83977f5 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/gottcha commit 5d24210279e26623ae6c98f7551e3565fdc9bc48
jdv
parents:
diff changeset
15 strain Gallid herpesvirus 2 0.3337 1 1 420 177874 177874 0.002361221988599 12 0 3 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.00 35.00 125745044 0 0 420 177874 177874 0.002361221988599 12 0 420 1.000000000000000 0.002361221988599 0.224451015887651 0.009787928221860 0.010519987977157 35.000000000000000 35.000000000000000 4 105.0 43.6 50 140 140:2,90:1,50:1 140:140:90:90:50:50 filtered filtered