Mercurial > repos > jdv > b2b_summarize_assembly

comparison summarize_assembly.xml @ 1:5def63878840 draft default tip

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"planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 9bf8a0462bd44f170c0371b6cae67dd0c3b3da9f-dirty"
author jdv
date Tue, 28 Sep 2021 06:16:07 +0000
parents 114353d77370
children
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0:114353d77370 1:5def63878840
6 6
7 <requirements> 7 <requirements>
8 <!-- 8 <!--
9 <requirement type="package" version="0.003">b2b-utils</requirement> 9 <requirement type="package" version="0.003">b2b-utils</requirement>
10 --> 10 -->
11 <requirement type="package" version="0.006007">perl-biox-seq</requirement> 11 <requirement type="package" version="0.008002">perl-biox-seq</requirement>
12 <requirement type="package">perl-list-moreutils</requirement>
12 </requirements> 13 </requirements>
13 14
14 <!-- ***************************************************************** --> 15 <!-- ***************************************************************** -->
15 16
16 <version_command>summarize_assembly --version | perl -wnE'print "$1\n" for /summarize_assembly v(.+)/g'</version_command> 17 <version_command>perl $__tool_directory__/summarize_assembly --version | perl -wnE'print "$1\n" for /summarize_assembly v(.+)/g'</version_command>
17 18
18 <!-- ***************************************************************** --> 19 <!-- ***************************************************************** -->
19 20
20 <command detect_errors="aggressive"> 21 <command detect_errors="aggressive">
21 <![CDATA[ 22 <![CDATA[
22 23
23 summarize_assembly 24 perl $__tool_directory__/summarize_assembly
24 --fasta $input1 25 --fasta $input1
25 --cutoffs $cutoffs 26 --cutoffs $cutoffs
26 #if $split_N: 27 #if $split_N:
27 --split_N 28 --split_N
28 #end if 29 #end if