Mercurial > repos > jdv > b2b_summarize_assembly

diff summarize_assembly.xml @ 1:5def63878840 draft default tip

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"planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 9bf8a0462bd44f170c0371b6cae67dd0c3b3da9f-dirty"
author jdv
date Tue, 28 Sep 2021 06:16:07 +0000
parents 114353d77370
children
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line diff
--- a/summarize_assembly.xml	Wed Jul 17 17:49:39 2019 -0400
+++ b/summarize_assembly.xml	Tue Sep 28 06:16:07 2021 +0000
@@ -8,19 +8,20 @@
     <!--
         <requirement type="package" version="0.003">b2b-utils</requirement>
     -->
-        <requirement type="package" version="0.006007">perl-biox-seq</requirement>
+        <requirement type="package" version="0.008002">perl-biox-seq</requirement>
+        <requirement type="package">perl-list-moreutils</requirement>
     </requirements>
 
     <!-- ***************************************************************** -->
 
-    <version_command>summarize_assembly --version | perl -wnE'print "$1\n" for /summarize_assembly v(.+)/g'</version_command>
+    <version_command>perl $__tool_directory__/summarize_assembly --version | perl -wnE'print "$1\n" for /summarize_assembly v(.+)/g'</version_command>
 
     <!-- ***************************************************************** -->
 
     <command detect_errors="aggressive">
     <![CDATA[
 
-    summarize_assembly
+    perl $__tool_directory__/summarize_assembly
     --fasta $input1
     --cutoffs $cutoffs
     #if $split_N: