Mercurial > repos > jdv > b2b_bam2consensus

annotate test-data/summarize.strip.txt @ 0:d32139014ec3 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
author jdv
date Wed, 17 Jul 2019 17:47:45 -0400
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
1 ----------------------------------------
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
2 Summary
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
3 ----------------------------------------
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
4 number of scaffolds: 10
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
5 total length: 27689
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
6 average length: 2769
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
7 G/C content: 50%
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
8 ambiguous content: 12%
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
9 longest scaffold: 5980
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
10 N50: 4945
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
11 N90: 1997
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
12 N95: 1197
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
13 shortest scaffold: 209
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
14 NOTE: Ns were stripped for above calculations
d32139014ec3 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
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15 ----------------------------------------