Mercurial > repos > jdv > albacore

comparison albacore_denoise.xml @ 2:b658298e65d8 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
author jdv
date Fri, 08 Sep 2017 10:14:40 -0400
parents 0a4f83207e53
children
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1:0a4f83207e53 2:b658298e65d8
44 44
45 <!-- ***************************************************************** --> 45 <!-- ***************************************************************** -->
46 46
47 <inputs> 47 <inputs>
48 48
49 <param name="inputs" type="data_collection" collection_type="list" format="fast5_archive" label="Input reads" multiple="true" /> 49 <param name="inputs" type="data_collection" collection_type="list" format="fast5.tar" label="Input reads" multiple="true" />
50 <param name="table" type="data" format="tabular" label="Read table" /> 50 <param name="table" type="data" format="tabular" label="Read table" />
51 <conditional name="filter"> 51 <conditional name="filter">
52 <param name="type" type="select" label="Filtering type"> 52 <param name="type" type="select" label="Filtering type">
53 <option value="cutoffs" selected="true">By cutoff</option> 53 <option value="cutoffs" selected="true">By cutoff</option>
54 <option value="topN">Top N bins</option> 54 <option value="topN">Top N bins</option>
68 <!-- ***************************************************************** --> 68 <!-- ***************************************************************** -->
69 69
70 <outputs> 70 <outputs>
71 71
72 <collection type="list" name="outputs" label="${tool.name} on ${on_string} (reads)"> 72 <collection type="list" name="outputs" label="${tool.name} on ${on_string} (reads)">
73 <discover_datasets pattern="(?P&lt;name&gt;.*)\.fast5\.tar\.gz$" directory="outputs" format="fast5_archive" /> 73 <discover_datasets pattern="(?P&lt;name&gt;.*)\.fast5\.tar\.gz$" directory="outputs" format="fast5.tar.gz" />
74 </collection> 74 </collection>
75 75
76 <data name="summary" format="tabular" label="${tool.name} on ${on_string} (summary)" /> 76 <data name="summary" format="tabular" label="${tool.name} on ${on_string} (summary)" />
77 77
78 </outputs> 78 </outputs>
79 79
80 <!-- ***************************************************************** --> 80 <!-- ***************************************************************** -->
81 81
82 <!--
83 <tests> 82 <tests>
84 <test>
85 <param name="input" value="test_data.fast5.tar.gz" ftype="fast5_archive" />
86 <output name="output" file="test_data.fastq" compare="diff" />
87 </test>
88 </tests> 83 </tests>
89 -->
90 84
91 <!-- ***************************************************************** --> 85 <!-- ***************************************************************** -->
92 86
93 <help> 87 <help>
94 <![CDATA[ 88 <![CDATA[