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annotate out_dir/pipeline.log @ 2:b658298e65d8 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
author jdv
date Fri, 08 Sep 2017 10:14:40 -0400
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b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
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diff changeset
1 2017-09-08 09:12:50,286 ONT Albacore Sequencing Pipeline Software (version 1.2.6)
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
2 2017-09-08 09:12:50,286 Debug level is 0
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
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diff changeset
3 2017-09-08 09:12:50,292 Selected config file /home/jeremy/.local/lib/python3.5/site-packages/albacore/data_versioned/r95_450bps_linear.cfg to match flowcell FLO-MIN107 and kit SQK-LSK108
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
4 2017-09-08 09:12:50,292 Loaded barcoding config from /home/jeremy/.local/lib/python3.5/site-packages/albacore/data_versioned/barcoding.cfg
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
5 2017-09-08 09:12:51,304 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12068_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
6 2017-09-08 09:12:51,456 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12091_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
7 2017-09-08 09:12:51,550 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12068_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
8 2017-09-08 09:12:51,644 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12153_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
9 2017-09-08 09:12:51,671 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12091_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
10 2017-09-08 09:12:51,786 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12175_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
11 2017-09-08 09:12:51,840 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12153_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
12 2017-09-08 09:12:52,070 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12081_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
13 2017-09-08 09:12:52,124 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12175_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
14 2017-09-08 09:12:52,395 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12113_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
15 2017-09-08 09:12:52,450 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12081_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
16 2017-09-08 09:12:52,656 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12085_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
17 2017-09-08 09:12:52,681 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12113_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
18 2017-09-08 09:12:52,819 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12103_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
19 2017-09-08 09:12:52,873 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12085_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
20 2017-09-08 09:12:53,126 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12103_ch_399_strand.fast5".
b658298e65d8 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
jdv
parents:
diff changeset
21 2017-09-08 09:12:53,128 Done.