Mercurial > repos > iuc > virhunter

annotate tool-data/virhunter.loc.sample @ 1:341bcf4d4fcd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
author iuc
date Thu, 05 Jan 2023 14:27:31 +0000
parents 6052fcc0d113
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
1 #This is a sample file distributed with Galaxy that enables tools
1
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
2 #to use a directory of virhunter hdf5 model files. You will need
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
3 #to create these data files and then create a virhunter.loc file
0
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
4 #similar to this one (store it in this directory) that points to
1
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
5 #the directories in which those files are stored. The virhunter.loc
0
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
6 #file has this format (white space characters are TAB characters):
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
7 #
1
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
8 # <value> <name> <path>
0
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
9 #
1
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
10 #So, for example, if you had fungi hdf5 model files stored in
0
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
11 #
1
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
12 # /tool-data/weights/peach/,
0
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
13 #
1
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
14 #then the virhunter.loc entry would look like this:
0
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
15 #
1
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
16 #peach peach /data/databases/path/weights/peach
0
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
17 #
1
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
18 #and your /tool-data/weights/peach/ directory
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
19 #would contain model_5_500.h5,model_7_500.h5,model_10_500.h5 and model_5_1000.h5, model_7_1000.h5, model_10_1000.h5 files.
0
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
20 #
1
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
21 #Your virhunter.loc file should include an entry per line for
0
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
22 #each index set you have stored. The file in the path does actually
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
23 #exist, but it should never be directly used. Instead, the name serves
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
24 #as a prefix for the index file. For example:
6052fcc0d113 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 628688c1302dbf972e48806d2a5bafe27847bdcc
iuc
parents:
diff changeset
25 #
1
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
26 #peach peach /data/databases/path/weights/peach
341bcf4d4fcd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
iuc
parents: 0
diff changeset
27 #grapevine grapevine /data/databases/path/weights/peach