Mercurial > repos > iuc > vardict_java

annotate macros.xml @ 3:04c9c72b2648 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit 80e3742f499e8efabad1fe7627201466d0bdd190"
author iuc
date Thu, 27 Jan 2022 15:18:51 +0000
parents 6733325083d3
children
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7966f5292530 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit 8a561c35737f2bdef39842ce7f297a286380bf36"
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1 <macros>
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2 <token name="@VERSION_SUFFIX@">1</token>
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3 <token name="@TOOL_VERSION@">1.8.3</token>
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4 <xml name="ref_select">
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5 <conditional name="reference_source">
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6 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome file">
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7 <option value="cached" selected="true">Use a built-in genome</option>
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8 <option value="history">Use a genome from the history</option>
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9 </param>
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10 <when value="cached">
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11 <param name="ref_file" type="select" label="Reference Genome File">
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12 <options from_data_table="fasta_indexes"/>
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13 </param>
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14 </when>
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15 <when value="history">
7966f5292530 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit 8a561c35737f2bdef39842ce7f297a286380bf36"
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16 <param name="ref_file" format="fasta" type="data" label="Reference Genome File" />
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17 </when>
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18 </conditional>
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19 </xml>
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20 <xml name="stdio">
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21 <stdio>
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22 <regex match="java.lang.OutOfMemoryError" source="stderr" level="fatal_oom" description="Out of memory error occurred" />
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23 </stdio>
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24 </xml>
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25 <xml name="input_default">
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26 <param name="tumor" type="data" format="bam" label="Tumor file" />
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27 <param name="interval_file" type="data" format="txt" optional="true" label="Chromosomes" help="Restrict SNV calls to the following list of chromosomes (one per line)" />
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28 </xml>
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29 </macros>