Mercurial > repos > iuc > ucsc_chainsort

diff chainsort.xml @ 1:754d04fba5b9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/chainsort commit 303002db06287fb25306020c4391626842f52162
author iuc
date Sun, 22 Sep 2024 07:25:39 +0000
parents 7e2d89cef769
children c0300333731b
line wrap: on
line diff
--- a/chainsort.xml	Mon Aug 26 13:54:15 2024 +0000
+++ b/chainsort.xml	Sun Sep 22 07:25:39 2024 +0000
@@ -43,12 +43,16 @@
     <help><![CDATA[
 **What it does**
 
-`chainSort`_ is a tool to sort chains.
+`chainSort`_ is a tool to sort `chains`_.
 
 Note this tool loads all chains into memory, so it is not suitable for large datasets. Instead, run chainSort on multiple small dataset, followed by chainMergeSort.
 
+For implementation details see chainSort's `source code`_.
+
 .. _chainSort: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt
-    ]]>    </help>
+.. _chains: https://genome.ucsc.edu/goldenPath/help/chain.html
+.. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/mouseStuff/chainSort/chainSort.c
+]]>    </help>
     <citations>
         <citation type="doi">10.1093/bib/bbs038</citation>
     </citations>