Mercurial > repos > iuc > ucsc_chainsort

comparison chainsort.xml @ 1:754d04fba5b9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/chainsort commit 303002db06287fb25306020c4391626842f52162
author iuc
date Sun, 22 Sep 2024 07:25:39 +0000
parents 7e2d89cef769
children c0300333731b
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0:7e2d89cef769 1:754d04fba5b9
41 </test> 41 </test>
42 </tests> 42 </tests>
43 <help><![CDATA[ 43 <help><![CDATA[
44 **What it does** 44 **What it does**
45 45
46 `chainSort`_ is a tool to sort chains. 46 `chainSort`_ is a tool to sort `chains`_.
47 47
48 Note this tool loads all chains into memory, so it is not suitable for large datasets. Instead, run chainSort on multiple small dataset, followed by chainMergeSort. 48 Note this tool loads all chains into memory, so it is not suitable for large datasets. Instead, run chainSort on multiple small dataset, followed by chainMergeSort.
49 49
50 For implementation details see chainSort's `source code`_.
51
50 .. _chainSort: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt 52 .. _chainSort: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt
51 ]]> </help> 53 .. _chains: https://genome.ucsc.edu/goldenPath/help/chain.html
54 .. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/mouseStuff/chainSort/chainSort.c
55 ]]> </help>
52 <citations> 56 <citations>
53 <citation type="doi">10.1093/bib/bbs038</citation> 57 <citation type="doi">10.1093/bib/bbs038</citation>
54 </citations> 58 </citations>
55 </tool> 59 </tool>