Mercurial > repos > iuc > trinity

diff tool_dependencies.xml @ 2:1317615eff73 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 3c4a2b13b0f3a280de4f98f4f5e0dc29e10fc7a0
author iuc
date Tue, 29 Mar 2016 06:46:09 -0400
parents fd94a21c2131
children dfe891be734c
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--- a/tool_dependencies.xml	Wed Dec 09 07:17:55 2015 -0500
+++ b/tool_dependencies.xml	Tue Mar 29 06:46:09 2016 -0400
@@ -1,13 +1,31 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="trinity" version="2.0.6">
-        <repository changeset_revision="0a09014ebc26" name="package_trinity_2_0_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="trinity" version="2.1.1">
+        <repository changeset_revision="bfd7596eecbe" name="package_trinity_2_1_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="bowtie" version="1.1.2">
         <repository changeset_revision="8584a4574ab1" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="bowtie2" version="2.2.6">
+        <repository changeset_revision="9d2f1e2f5919" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
     <package name="samtools" version="1.2">
-        <repository changeset_revision="a55970300738" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="edger" version="3.12.0">
+        <repository changeset_revision="09793dbcaf78" name="package_r_edger_3_12_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="rsem" version="1.2.28">
+        <repository changeset_revision="987ca85aead4" name="package_rsem_1_2_28" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="express" version="1.5.1">
+        <repository changeset_revision="690e3e7d202b" name="package_express_1_5_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="limma" version="3.27.4">
+        <repository changeset_revision="956b99cc83e7" name="package_r_limma_3_27_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="deseq2" version="1.10.0">
+       <repository changeset_revision="b771de3e4f63" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <set_environment version="1.0">
         <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable>