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comparison tool_dependencies.xml @ 2:1317615eff73 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 3c4a2b13b0f3a280de4f98f4f5e0dc29e10fc7a0
author iuc
date Tue, 29 Mar 2016 06:46:09 -0400
parents fd94a21c2131
children dfe891be734c
comparison
equal deleted inserted replaced
1:fd94a21c2131 2:1317615eff73
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="trinity" version="2.0.6"> 3 <package name="trinity" version="2.1.1">
4 <repository changeset_revision="0a09014ebc26" name="package_trinity_2_0_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="bfd7596eecbe" name="package_trinity_2_1_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="bowtie" version="1.1.2"> 6 <package name="bowtie" version="1.1.2">
7 <repository changeset_revision="8584a4574ab1" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="8584a4574ab1" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="bowtie2" version="2.2.6">
10 <repository changeset_revision="9d2f1e2f5919" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package>
9 <package name="samtools" version="1.2"> 12 <package name="samtools" version="1.2">
10 <repository changeset_revision="a55970300738" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="edger" version="3.12.0">
16 <repository changeset_revision="09793dbcaf78" name="package_r_edger_3_12_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="rsem" version="1.2.28">
19 <repository changeset_revision="987ca85aead4" name="package_rsem_1_2_28" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
20 </package>
21 <package name="express" version="1.5.1">
22 <repository changeset_revision="690e3e7d202b" name="package_express_1_5_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
23 </package>
24 <package name="limma" version="3.27.4">
25 <repository changeset_revision="956b99cc83e7" name="package_r_limma_3_27_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
26 </package>
27 <package name="deseq2" version="1.10.0">
28 <repository changeset_revision="b771de3e4f63" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 29 </package>
12 <set_environment version="1.0"> 30 <set_environment version="1.0">
13 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable> 31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable>
14 </set_environment> 32 </set_environment>
15 </tool_dependency> 33 </tool_dependency>