Mercurial > repos > iuc > suite_mothur

changeset 12:d174dbd82fc1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ff56a4c9218ddea84ff5cd72fd98c62db212465d"
author iuc
date Thu, 05 Nov 2020 21:47:03 +0000
parents 4d25ab905087
children 9d951fa73152
files repository_dependencies.xml
diffstat 1 files changed, 132 insertions(+), 131 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Fri Aug 03 14:21:23 2018 -0400
+++ b/repository_dependencies.xml	Thu Nov 05 21:47:03 2020 +0000
@@ -1,131 +1,132 @@
-<?xml version="1.0"?>
-<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">  <repository changeset_revision="1d504f38a026" name="mothur_biom_info" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="72367f588f5b" name="mothur_make_lefse" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="933a5b221371" name="mothur_create_database" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c2bee27c0667" name="mothur_taxonomy_to_krona" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ebb7b06a9d9b" name="mothur_sens_spec" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d4fa8b936639" name="mothur_chimera_slayer" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="fff8087f25eb" name="mothur_reverse_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="db4dff18e186" name="mothur_pairwise_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="9f9b0d5c7231" name="mothur_get_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c7a127baf4de" name="mothur_degap_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="50dff256b82a" name="mothur_trim_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5784acc960a1" name="mothur_merge_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f504b4900238" name="mothur_make_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="1f8843dd84d7" name="mothur_remove_rare" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a7fe947764e5" name="mothur_mimarks_attributes" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ac48d6844ce5" name="mothur_get_dists" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="57c6e7cd831b" name="mothur_make_contigs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a5016cbd4221" name="mothur_unique_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="2bed94744a3b" name="mothur_homova" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c69468622b1e" name="mothur_lefse" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="6501ef30e000" name="mothur_summary_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="180cfbc9e105" name="mothur_consensus_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b1e1753af16e" name="mothur_libshuff" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e84817af097b" name="mothur_align_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f218664cc69e" name="mothur_trim_flows" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7b7c528069b5" name="mothur_summary_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="45fb82a493f8" name="mothur_make_fastq" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="65aebcce2892" name="mothur_rename_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c2012d0dcaa1" name="mothur_fastq_info" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="75ce8f6ed7f0" name="mothur_get_communitytype" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="15da80171d8b" name="mothur_split_abund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="da0d3252dd0e" name="mothur_pca" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="94b89d392680" name="mothur_get_relabund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="dd8c22bdbba2" name="mothur_get_label" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5de808683006" name="mothur_filter_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f9909ce41466" name="mothur_primer_design" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b65367218b37" name="mothur_venn" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0459d528d582" name="mothur_remove_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="1484b9242021" name="mothur_list_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="bd9107a27c63" name="mothur_parsimony" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c5eb94534b56" name="mothur_sort_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="9fbbeeae5267" name="mothur_get_coremicrobiome" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ba7ab7b08e3f" name="mothur_normalize_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="267fd4356df3" name="mothur_pre_cluster" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="561705ff3b37" name="mothur_screen_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="595ade4cc697" name="mothur_unifrac_unweighted" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="866820087837" name="mothur_seq_error" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="fd378a7b7c99" name="mothur_chimera_ccode" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="1660dae833fe" name="mothur_collect_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="eebb0c443c3b" name="mothur_remove_lineage" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d780522d97bb" name="mothur_clearcut" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="70e962eb0d5a" name="mothur_bin_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="382a332a4706" name="mothur_chimera_bellerophon" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="8ccd6a1a7ff8" name="mothur_rarefaction_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="64384145e15a" name="mothur_cluster" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="4c64375d88b5" name="mothur_corr_axes" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d0f526f96d1e" name="mothur_get_group" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3eb0d727daa8" name="mothur_make_group" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3350822ae8a7" name="mothur_chimera_vsearch" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c341211010c6" name="mothur_anosim" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3e83459c37c8" name="mothur_rarefaction_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="fdf7a3782248" name="mothur_deunique_tree" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a6947438d153" name="mothur_merge_sfffiles" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="df705078eb4e" name="mothur_indicator" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="608550f0438e" name="mothur_dist_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="37cd52ad1f46" name="mothur_classify_tree" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="9ce5cadfb1ef" name="mothur_filter_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="89de1d8c50f2" name="mothur_get_oturep" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="9cb868b9ab02" name="mothur_remove_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3576cf9e7fd3" name="mothur_nmds" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="8337947024a3" name="mothur_summary_qual" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="714232f4ace2" name="mothur_summary_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f55a5085a570" name="mothur_get_otus" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="2f33690de2b1" name="mothur_cooccurrence" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="00a5be736b09" name="mothur_merge_count" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="9aa2e37d8248" name="mothur_align_check" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5e607fa754bc" name="mothur_heatmap_sim" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ccb08c40f6f9" name="mothur_classify_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a89999342950" name="mothur_deunique_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c5a1dd5fbbfd" name="mothur_chimera_pintail" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="52441faae412" name="mothur_make_lookup" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e6789cc6146f" name="mothur_get_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5277694ef118" name="mothur_cluster_classic" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5bcc2ec88c52" name="mothur_amova" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ef5ef9d535c2" name="mothur_list_otulabels" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f4a9f4cbdeae" name="mothur_get_otulist" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="9546bb7c1b61" name="mothur_cluster_split" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="dba8318f7a4d" name="mothur_shhh_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ecce296a3ae3" name="mothur_count_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="970693ff9731" name="mothur_classify_otu" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ac8e315c6a26" name="mothur_phylotype" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0ab546e3c614" name="mothur_pcoa" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="9f7794dc9bc8" name="mothur_mantel" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d671787e84f4" name="mothur_make_biom" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e81afadc4749" name="mothur_merge_files" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="1618bb869b3a" name="mothur_sffinfo" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="006c0ab5ccae" name="mothur_get_otulabels" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d3670dc9ac85" name="mothur_tree_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e008d4ff8579" name="mothur_pcr_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c22373875c99" name="mothur_unifrac_weighted" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c43192c5616d" name="mothur_chimera_check" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="8a4e2d042ee9" name="mothur_remove_dists" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="1e364c5f99df" name="mothur_otu_hierarchy" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="2d285bbbb692" name="mothur_count_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e1f2e24da6ca" name="mothur_remove_otus" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ef91c214ad71" name="mothur_chimera_uchime" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="cbe23f218f31" name="mothur_shhh_flows" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f57a8d6c4334" name="mothur_cluster_fragments" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="667899de13aa" name="mothur_heatmap_bin" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a17c877f16e1" name="mothur_remove_otulabels" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b69979acd66a" name="mothur_chop_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="569dde1725b1" name="mothur_make_design" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e78c62ae1f84" name="mothur_split_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5349ab1a18c4" name="mothur_dist_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="be86749ca1ce" name="mothur_get_sharedseqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="fff70a334304" name="mothur_get_rabund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="932981af7917" name="mothur_phylo_diversity" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="89f3db247d9b" name="mothur_summary_tax" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="94167c21db62" name="mothur_sub_sample" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="2249a1ea2252" name="mothur_collect_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d6334af68492" name="mothur_parse_list" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="36a410674667" name="mothur_get_mimarkspackage" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="682933ec6874" name="mothur_metastats" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="347d0eb81003" name="mothur_otu_association" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="21e235e2a30c" name="mothur_merge_taxsummary" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="96eb54a3f485" name="mothur_make_sra" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="52415820b3ff" name="mothur_chimera_perseus" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7f1e1789b216" name="mothur_get_lineage" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="23ba126fc1aa" name="mothur_get_sabund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-</repositories>
+<?xml version="1.0" ?>
+<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">
+    <repository owner="iuc" name="mothur_make_contigs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4fc844fea7d0"/>
+    <repository owner="iuc" name="mothur_sens_spec" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="99259c0c9305"/>
+    <repository owner="iuc" name="mothur_reverse_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1896bf0e91a1"/>
+    <repository owner="iuc" name="mothur_remove_lineage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="09f8f774c079"/>
+    <repository owner="iuc" name="mothur_make_fastq" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="08f087da9b78"/>
+    <repository owner="iuc" name="mothur_merge_sfffiles" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ef5f3a24eeda"/>
+    <repository owner="iuc" name="mothur_tree_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1436df61c9e6"/>
+    <repository owner="iuc" name="mothur_heatmap_sim" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2bafb697c4a9"/>
+    <repository owner="iuc" name="mothur_get_label" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0d962cfcc378"/>
+    <repository owner="iuc" name="mothur_shhh_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="42c8df132016"/>
+    <repository owner="iuc" name="mothur_amova" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fe25bea175a1"/>
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\ No newline at end of file