Mercurial > repos > iuc > suite_mothur

changeset 6:37d5fbd34f23 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 4648c7574a78601e03ae6a318cbcd5b492a8a9f4
author iuc
date Wed, 14 Feb 2018 12:54:52 -0500
parents 43366be20d62
children 34dc4ad7fac1
files repository_dependencies.xml
diffstat 1 files changed, 129 insertions(+), 126 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Wed Sep 13 16:07:56 2017 -0400
+++ b/repository_dependencies.xml	Wed Feb 14 12:54:52 2018 -0500
@@ -1,128 +1,131 @@
 <?xml version="1.0"?>
-<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">  <repository changeset_revision="90dd909d4bc5" name="mothur_create_database" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="aaeb8f2dcc7f" name="mothur_shhh_flows" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5a23bee92151" name="mothur_homova" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="419044fa4f0c" name="mothur_mimarks_attributes" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="46392283eb59" name="mothur_merge_taxsummary" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a5e02397196f" name="mothur_pca" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7c6fd799d0e7" name="mothur_amova" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="2b445516aed1" name="mothur_unifrac_unweighted" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="40561fdfb8d3" name="mothur_get_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7ba13fa642c5" name="mothur_classify_rf" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="248a0277c324" name="mothur_classify_otu" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3b8c738bd002" name="mothur_dist_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d575bc7156eb" name="mothur_chimera_perseus" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e493ad56afa2" name="mothur_consensus_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="89561cff282b" name="mothur_fastq_info" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="4055bc0b0d2d" name="mothur_make_design" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3377284566a0" name="mothur_get_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="cb91c12c8a34" name="mothur_bin_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="bb99ebc45afe" name="mothur_make_fastq" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0f076fb8f068" name="mothur_get_dists" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="debe74cafeda" name="mothur_summary_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e33c81f572fe" name="mothur_trim_flows" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="53b704cc17ad" name="mothur_chimera_pintail" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="615347ff88db" name="mothur_summary_tax" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7865850a8291" name="mothur_get_sharedseqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b9fbf6640324" name="mothur_count_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="bd3e7fe37de6" name="mothur_align_check" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0098133e80a8" name="mothur_get_otulist" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="beed3d29e380" name="mothur_dist_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="2276abb058bf" name="mothur_get_group" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3446d8f41bb4" name="mothur_get_mimarkspackage" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="1e72883a51ac" name="mothur_hcluster" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="02132d284d03" name="mothur_lefse" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="cedb055d7f33" name="mothur_get_coremicrobiome" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e04f78ea3e59" name="mothur_sub_sample" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="a5d740ef250d" name="mothur_sens_spec" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3be61ce81469" name="mothur_merge_files" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="6d082f402534" name="mothur_get_label" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="341309a7eca5" name="mothur_rarefaction_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e57f6876fc0f" name="mothur_mantel" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="371a5f47ba8a" name="mothur_chimera_uchime" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f0ce762bafb0" name="mothur_merge_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="92bc36f57d5b" name="mothur_trim_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ce407814d4de" name="mothur_split_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="410d665a16a0" name="mothur_filter_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="22dff2e08c84" name="mothur_make_group" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="239a1d4afe76" name="mothur_cluster_classic" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="284ff9fc64b9" name="mothur_list_otulabels" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="37d8464c6fb9" name="mothur_cluster_fragments" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="cb74d85a9cb4" name="mothur_get_sabund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="b1532801d45b" name="mothur_make_lefse" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="fec0536d7842" name="mothur_unique_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0508c6389434" name="mothur_sort_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="a94805e41802" name="mothur_normalize_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="eed1d4b5a4bd" name="mothur_chimera_slayer" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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-  <repository changeset_revision="bd9894f104a9" name="mothur_shhh_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">  <repository changeset_revision="36b494091e41" name="mothur_bin_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="58a3c5074d9e" name="mothur_make_fastq" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="548d7023cef0" name="mothur_summary_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d9c06064675b" name="mothur_make_group" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="7bea60a287ca" name="mothur_phylotype" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="51213b319a26" name="mothur_pre_cluster" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="64b2dc49c0ae" name="mothur_summary_qual" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c92395686fba" name="mothur_get_communitytype" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="fe1b1c3c92f0" name="mothur_cooccurrence" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="7bfd6a0ceeb0" name="mothur_clearcut" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="ad2be471112f" name="mothur_chop_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="73a8e8495df3" name="mothur_collect_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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