Mercurial > repos > iuc > suite_mothur

changeset 0:1aa5c8a48cb9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 180a403421967d36f995941b1a4561349d75cfc5
author iuc
date Fri, 24 Jun 2016 18:26:33 -0400
parents
children e12d889cc905
files repository_dependencies.xml
diffstat 1 files changed, 125 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Fri Jun 24 18:26:33 2016 -0400
@@ -0,0 +1,125 @@
+<?xml version="1.0"?>
+<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">  <repository changeset_revision="5fce559c4ffa" name="mothur_align_check" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="5c0b829902eb" name="mothur_align_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6da360fb8d1b" name="mothur_amova" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="42447dc52f86" name="mothur_anosim" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c9045fb0bf49" name="mothur_bin_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4e08cd208ede" name="mothur_chimera_bellerophon" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d6b58ab6093a" name="mothur_chimera_ccode" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4966028096a3" name="mothur_chimera_check" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="684d206e5a48" name="mothur_chimera_perseus" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8f24f22f9e59" name="mothur_chimera_pintail" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c1e34abe35e8" name="mothur_chimera_slayer" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="7343a9c7c972" name="mothur_chimera_uchime" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f1d0a5a4e30c" name="mothur_chop_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="21adc0e62211" name="mothur_classify_otu" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0b58880da760" name="mothur_classify_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2acbb5457141" name="mothur_classify_tree" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="1b88f1cd6f5f" name="mothur_cluster_classic" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c9049c1a4018" name="mothur_cluster_fragments" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e56e12d98ac4" name="mothur_cluster_split" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="5d1b3989db21" name="mothur_cluster" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e9f8b81fa72c" name="mothur_collect_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="dd350a207497" name="mothur_collect_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="fb865c8dc76f" name="mothur_consensus_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e1330cc9b7e9" name="mothur_cooccurrence" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="3eb3514b055b" name="mothur_corr_axes" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2d98db6098be" name="mothur_count_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="be91d6962b0c" name="mothur_count_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6efb9d6ab2b1" name="mothur_create_database" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="ae5e88c4d82b" name="mothur_degap_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="57cf9fc6c84a" name="mothur_deunique_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="049d12e3c803" name="mothur_deunique_tree" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2b4254acee00" name="mothur_dist_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e478ba802667" name="mothur_dist_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="32f444a36d12" name="mothur_filter_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4adf107b126e" name="mothur_filter_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="1dd4d752f823" name="mothur_get_coremicrobiome" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c5b0a5fca6d8" name="mothur_get_dists" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="64172c653a64" name="mothur_get_group" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="33c6376bd824" name="mothur_get_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8dd86660e447" name="mothur_get_label" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0ac6204992ed" name="mothur_get_lineage" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="066b8aaf5a9a" name="mothur_get_mimarkspackage" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="29aeb2862450" name="mothur_get_otulabels" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f1bc490460a7" name="mothur_get_otulist" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d568050a95be" name="mothur_get_oturep" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="43d0b4bf9f1a" name="mothur_get_otus" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="31b9f13b80a6" name="mothur_get_rabund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="05c1f352cf4e" name="mothur_get_relabund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c24b77b63a4c" name="mothur_get_sabund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d54a9887df4a" name="mothur_get_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e5faf9bdcbbe" name="mothur_hcluster" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="712b61562375" name="mothur_heatmap_bin" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="edf78e2b71d4" name="mothur_heatmap_sim" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="32f581a83b92" name="mothur_homova" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="10ae17108e85" name="mothur_indicator" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="73a96aeacf46" name="mothur_libshuff" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="51ce23a3ea93" name="mothur_list_otulabels" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="1fdda3adf67e" name="mothur_list_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="48e4f4dcf0ee" name="mothur_make_biom" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d9268e6b2ea0" name="mothur_make_contigs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="78dcf76823de" name="mothur_make_design" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="10e56de9ad1a" name="mothur_make_fastq" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d6b4ae743405" name="mothur_make_files" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2f6aaf8b5068" name="mothur_make_lefse" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f4b0766a9082" name="mothur_make_lookup" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e9d1265e868e" name="mothur_make_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0c5468e0d272" name="mothur_clearcut" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="fa0df51ef97b" name="mothur_fastq_info" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d20133cb8909" name="mothur_get_sharedseqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2d09b22f4a95" name="mothur_make_sra" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="aedc410a9d26" name="mothur_phylo_diversity" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b2c31e79e969" name="mothur_sffinfo" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="480cdda84b44" name="mothur_mantel" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c3c902ee257c" name="mothur_merge_files" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="ed5f1b592d84" name="mothur_merge_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="1e33b551033e" name="mothur_merge_sfffiles" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="701fca566b77" name="mothur_merge_taxsummary" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="16bb7bd44663" name="mothur_metastats" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0d6d694d9d18" name="mothur_mimarks_attributes" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="82eea76f38ef" name="mothur_nmds" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="ed349f5c32fe" name="mothur_normalize_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="cf6d0719d0bf" name="mothur_otu_association" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="412256dfcafe" name="mothur_otu_hierarchy" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4e1ecccf9ab0" name="mothur_pairwise_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0817dd05dbaf" name="mothur_parse_list" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f9b48e5530cb" name="mothur_parsimony" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="52a9971dc4fa" name="mothur_pca" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="3c45088895b5" name="mothur_pcoa" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="3a534aab3952" name="mothur_pcr_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="78de57134315" name="mothur_phylotype" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4b5b8a603f52" name="mothur_pre_cluster" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="41cc6c979aa2" name="mothur_primer_design" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="709508e0cb2d" name="mothur_rarefaction_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4e53dc9d5e83" name="mothur_rarefaction_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="1c601f47dd3d" name="mothur_remove_dists" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e320a3719431" name="mothur_remove_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="152eaafb14ba" name="mothur_remove_lineage" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a88be48a8ddd" name="mothur_remove_otulabels" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8cef8feb87a7" name="mothur_remove_otus" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e3e42e0b45a3" name="mothur_remove_rare" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f9e64904c5dd" name="mothur_remove_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="34812b0dc74f" name="mothur_reverse_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="5a01375eadf0" name="mothur_screen_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="62cf20ef4411" name="mothur_sens_spec" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="3d74b329068b" name="mothur_seq_error" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="11ff85882cfb" name="mothur_shhh_flows" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="55a2994f3f3e" name="mothur_shhh_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="60c599375cad" name="mothur_sort_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2077ddb27f4c" name="mothur_split_abund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="089c0f0c6c18" name="mothur_split_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8ccebd04ca3d" name="mothur_sub_sample" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b889c8e70a45" name="mothur_summary_qual" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a8637d3ac14a" name="mothur_summary_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="5c753aec181b" name="mothur_summary_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b32ea8b26bda" name="mothur_summary_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="dce6ad939d97" name="mothur_summary_tax" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="75c9bf79f50e" name="mothur_tree_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f60bc63d84cf" name="mothur_trim_flows" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="47923befeb9a" name="mothur_trim_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8a9855847803" name="mothur_unifrac_unweighted" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="25f045c1d119" name="mothur_unifrac_weighted" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4098a8c01660" name="mothur_unique_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="3977ec624bc8" name="mothur_venn" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+</repositories>