Mercurial > repos > iuc > structureharvester
annotate structureharvester.xml @ 1:d6689391cd0c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
| author | iuc |
|---|---|
| date | Thu, 17 Sep 2020 09:34:31 +0000 |
| parents | 883112330bef |
| children | d926fce1459a |
| rev | line source |
|---|---|
|
0
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
1 <tool id="structureharvester" name="structureHarvester" version="0.6.94"> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
2 <description>for parsing STRUCTURE outputs and for performing the Evanno method</description> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
3 <requirements> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
4 <requirement type="package" version="0.6.94">structureharvester</requirement> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
5 </requirements> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
6 <version_command><![CDATA[ |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
7 structureHarvester.py --version |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
8 ]]></version_command> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
9 <command detect_errors="exit_code"><![CDATA[ |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
10 mkdir inputs && |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
11 #for $input in $inputs |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
12 ln -s '$input' 'inputs/$input.element_identifier' && |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
13 #end for |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
14 structureHarvester.py --dir inputs/ --out . $evanno $clumpp && |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
15 mv summary.txt '$summary' |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
16 #if $evanno |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
17 && mv evanno.txt $evanno |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
18 #end if |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
19 #if $clumpp |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
20 && mkdir clumpp_indfile clumpp_popfile |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
21 && mv *.indfile clumpp_indfile/ |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
22 && mv *.popfile clumpp_popfile/ |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
23 #end if |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
24 ]]></command> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
25 <inputs> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
26 <param name="inputs" type="data" format="txt" multiple="true" label="STRUCTURE outputs" /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
27 <param argument="--evanno" type="boolean" checked="false" truevalue="--evanno" falsevalue="" label="If possible, performs the Evanno 2005 method." help="You must test at least 3 values of K. K values must be sequential. The number of replicates per K > 1."/> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
28 <param argument="--clumpp" type="boolean" checked="false" truevalue="--clumpp" falsevalue="" label="Generates one K*.indfile for each value of K run, for use with CLUMPP." /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
29 </inputs> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
30 <outputs> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
31 <data name="summary" format="txt" label="Structure Harvester summary"/> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
32 <data name="evanno" format="txt" label="Evann method output"> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
33 <filter>evanno</filter> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
34 </data> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
35 <collection name="clumpp_indfile" type="list" label="Clumpp K*.indfile"> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
36 <filter>clumpp</filter> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
37 <discover_datasets pattern="__name__" format="txt" directory="clumpp_indfile" /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
38 </collection> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
39 <collection name="clumpp_popfile" type="list" label="Clumpp K*.popfile"> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
40 <filter>clumpp</filter> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
41 <discover_datasets pattern="__name__" format="txt" directory="clumpp_popfile" /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
42 </collection> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
43 </outputs> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
44 <tests> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
45 <test> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
46 <param name="inputs" value="example_harvester_archive/Admix_run_001_f,example_harvester_archive/Admix_run_002_f,example_harvester_archive/Admix_run_004_f,example_harvester_archive/Admix_run_005_f,example_harvester_archive/Admix_run_007_f,example_harvester_archive/Admix_run_008_f,example_harvester_archive/K1ReRun_run_1_f,example_harvester_archive/K1ReRun_run_2_f" /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
47 <param name="evanno" value="false" /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
48 <param name="clumpp" value="true" /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
49 <output name="summary"> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
50 <assert_contents> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
51 <has_line line="1	2	-4329.950000	0.070711" /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
52 <has_line line="4	2	-2773.550000	0.212132" /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
53 <has_line line="K1ReRun_run_2_f	2	1	-4330.0	-4300.2	59.7" /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
54 <has_line line="Admix_run_008_f	008	4	-2773.4	-2678.8	189.2" /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
55 <has_line line="Core version: vA.2 July 2014" /> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
56 </assert_contents> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
57 </output> |
|
1
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
58 <output_collection name="clumpp_indfile" type="list" count="4"> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
59 <element name="K1.indfile"> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
60 <assert_contents> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
61 <has_text text=" 1" /> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
62 <has_n_lines n="192" /> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
63 </assert_contents> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
64 </element> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
65 <element name="K4.indfile"> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
66 <assert_contents> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
67 <has_text text=" 1" /> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
68 <has_n_lines n="192" /> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
69 </assert_contents> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
70 </element> |
|
0
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
71 </output_collection> |
|
1
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
72 <output_collection name="clumpp_popfile" type="list" count="4"> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
73 <element name="K1.popfile"> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
74 <assert_contents> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
75 <has_text text=" 1" /> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
76 <has_n_lines n="34" /> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
77 </assert_contents> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
78 </element> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
79 <element name="K4.popfile"> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
80 <assert_contents> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
81 <has_text text=" 1" /> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
82 <has_n_lines n="34" /> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
83 </assert_contents> |
|
d6689391cd0c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 1d35c5c412b5702049917e54649960474595786c"
iuc
parents:
0
diff
changeset
|
84 </element> |
|
0
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
85 </output_collection> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
86 </test> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
87 </tests> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
88 <help><![CDATA[ |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
89 |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
90 Structure_Harvester_ is a program for parsing the output of Pritchard's STRUCTURE_ and for performing the Evanno method. |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
91 |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
92 .. _Structure_Harvester: http://taylor0.biology.ucla.edu/structureHarvester/ |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
93 .. _STRUCTURE: http://web.stanford.edu/group/pritchardlab/structure.html |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
94 |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
95 ]]></help> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
96 <citations> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
97 <citation type="doi">10.1007/s12686-011-9548-7</citation> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
98 <citation type="doi">10.1111/j.1365-294X.2005.02553.x</citation> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
99 <citation type="doi">10.1093/bioinformatics/btm233</citation> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
100 </citations> |
|
883112330bef
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester commit 8375ca4822c039d051473b38801066b8a9c1edc7
iuc
parents:
diff
changeset
|
101 </tool> |