Mercurial > repos > iuc > stacks_denovomap
changeset 1:f01dfd9117ea draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 1068e65346a52c8046cd4ce3ed9bb20b00860bd8
| author | iuc |
|---|---|
| date | Thu, 30 Jun 2016 01:06:49 -0400 |
| parents | 8b574177aa66 |
| children | 204d94136356 |
| files | stacks_denovomap.xml |
| diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/stacks_denovomap.xml Sat Jun 25 17:26:13 2016 -0400 +++ b/stacks_denovomap.xml Thu Jun 30 01:06:49 2016 -0400 @@ -127,8 +127,8 @@ #end if -M $assembly_options.M -n $assembly_options.n - -t $assembly_options.t - -H $assembly_options.H + $assembly_options.t + $assembly_options.H ## Batch description -b 1 @@ -179,7 +179,7 @@ <param name="P" argument="-P" type="integer" value="" optional="true" label="Minimum number of identical, raw reads required to create a stack in 'progeny' individuals" /> <param name="M" argument="-M" type="integer" value="2" label="Number of mismatches allowed between loci when processing a single individual"/> <param name="N" argument="-N" type="integer" value="" optional="true" label="Number of mismatches allowed when aligning secondary reads" help="default is [-M]+2" /> - <param name="n" argument="-n" type="integer" value="1" label="specify the number of mismatches allowed between loci when building the catalog"/> + <param name="n" argument="-n" type="integer" value="1" label="Number of mismatches allowed between loci when building the catalog"/> <param name="t" argument="-t" type="boolean" checked="false" truevalue="-t" falsevalue="" label="Remove, or break up, highly repetitive RAD-Tags in the ustacks program" /> <param name="H" argument="-H" type="boolean" checked="false" truevalue="-H" falsevalue="" label="Disable calling haplotypes from secondary reads" /> @@ -531,4 +531,3 @@ </help> <expand macro="citation" /> </tool> -