Mercurial > repos > iuc > snpsift

annotate snpSift_macros.xml @ 13:ed810da439cc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit d12a2e9dd273b4c23db48bbb747f32700887710e
author iuc
date Tue, 07 Jun 2016 09:41:13 -0400
parents f0faaa4d6ee5
children 80da7fae14b8
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1 <macros>
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2 <xml name="requirements">
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3 <requirements>
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ed810da439cc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit d12a2e9dd273b4c23db48bbb747f32700887710e
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4 <requirement type="package" version="4.1">snpEff</requirement>
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5 </requirements>
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6 </xml>
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7 <xml name="stdio">
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8 <stdio>
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9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
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10 <exit_code range="1:" level="fatal" description="Error" />
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11 </stdio>
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12 </xml>
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ed810da439cc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit d12a2e9dd273b4c23db48bbb747f32700887710e
iuc
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13 <xml name="version_command">
ed810da439cc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit d12a2e9dd273b4c23db48bbb747f32700887710e
iuc
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14 <version_command>java -jar "$SNPEFF_JAR_PATH/snpEff.jar" -version</version_command>
ed810da439cc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit d12a2e9dd273b4c23db48bbb747f32700887710e
iuc
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15 </xml>
ed810da439cc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit d12a2e9dd273b4c23db48bbb747f32700887710e
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16 <token name="@WRAPPER_VERSION@">4.1</token>
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17 <token name="@EXTERNAL_DOCUMENTATION@">
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19 For details about this tool, please go to:
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20 http://snpeff.sourceforge.net/SnpEff_manual.html
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22 </token>
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23 <token name="@CITATION_SECTION@">------
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24
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25 **Citation**
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27 For the underlying tool, please cite the following two publications:
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29 SnpSift citation:
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30 "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3:35, 2012.
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32 </token>
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33 <xml name="citations">
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34 <citations>
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35 <citation type="doi">10.3389/fgene.2012.00035</citation>
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36 <yield />
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37 </citations>
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38 </xml>
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39 </macros>