Mercurial > repos > iuc > snpeff

diff snpEff_macros.xml @ 7:aaa749ea91a2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit d12a2e9dd273b4c23db48bbb747f32700887710e
author iuc
date Tue, 07 Jun 2016 09:40:10 -0400
parents 114f423f99c0
children 1501e66908de
line wrap: on
line diff
--- a/snpEff_macros.xml	Tue Oct 13 17:30:57 2015 -0400
+++ b/snpEff_macros.xml	Tue Jun 07 09:40:10 2016 -0400
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="4.0">snpEff</requirement>
+            <requirement type="package" version="4.1">snpEff</requirement>
         </requirements>
     </xml>
   <xml name="stdio">
@@ -10,9 +10,12 @@
         <exit_code range="1:"  level="fatal" description="Error" />
     </stdio>
   </xml>
-  <token name="@WRAPPER_VERSION@">4.0</token>
-  <token name="@SNPEFF_VERSION@">SnpEff4.0</token>
-  <token name="@SNPEFF_DATABASE_URL@">https://snpeff-data.galaxyproject.org/databases/v4_0/</token>
+  <xml name="version_command">
+    <version_command>java -jar "$SNPEFF_JAR_PATH/snpEff.jar" -version</version_command>
+  </xml>
+  <token name="@WRAPPER_VERSION@">4.1</token>
+  <token name="@SNPEFF_VERSION@">SnpEff4.1</token>
+  <token name="@SNPEFF_DATABASE_URL@">https://snpeff-data.galaxyproject.org/databases/v4_1/</token>
   <token name="@EXTERNAL_DOCUMENTATION@">
 
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