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comparison snpEff_macros.xml @ 7:aaa749ea91a2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit d12a2e9dd273b4c23db48bbb747f32700887710e
author iuc
date Tue, 07 Jun 2016 09:40:10 -0400
parents 114f423f99c0
children 1501e66908de
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equal deleted inserted replaced
6:9ec1cb6f760d 7:aaa749ea91a2
1 <macros> 1 <macros>
2 <xml name="requirements"> 2 <xml name="requirements">
3 <requirements> 3 <requirements>
4 <requirement type="package" version="4.0">snpEff</requirement> 4 <requirement type="package" version="4.1">snpEff</requirement>
5 </requirements> 5 </requirements>
6 </xml> 6 </xml>
7 <xml name="stdio"> 7 <xml name="stdio">
8 <stdio> 8 <stdio>
9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> 9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
10 <exit_code range="1:" level="fatal" description="Error" /> 10 <exit_code range="1:" level="fatal" description="Error" />
11 </stdio> 11 </stdio>
12 </xml> 12 </xml>
13 <token name="@WRAPPER_VERSION@">4.0</token> 13 <xml name="version_command">
14 <token name="@SNPEFF_VERSION@">SnpEff4.0</token> 14 <version_command>java -jar "$SNPEFF_JAR_PATH/snpEff.jar" -version</version_command>
15 <token name="@SNPEFF_DATABASE_URL@">https://snpeff-data.galaxyproject.org/databases/v4_0/</token> 15 </xml>
16 <token name="@WRAPPER_VERSION@">4.1</token>
17 <token name="@SNPEFF_VERSION@">SnpEff4.1</token>
18 <token name="@SNPEFF_DATABASE_URL@">https://snpeff-data.galaxyproject.org/databases/v4_1/</token>
16 <token name="@EXTERNAL_DOCUMENTATION@"> 19 <token name="@EXTERNAL_DOCUMENTATION@">
17 20
18 For details about this tool, please go to: 21 For details about this tool, please go to:
19 http://snpeff.sourceforge.net/SnpEff_manual.html 22 http://snpeff.sourceforge.net/SnpEff_manual.html
20 23