--- a/snpEff_macros.xml	Fri Aug 15 06:11:23 2014 -0400
+++ b/snpEff_macros.xml	Tue Apr 07 10:54:12 2015 -0400
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.6">snpEff</requirement>
+            <requirement type="package" version="4.0">snpEff</requirement>
         </requirements>
     </xml>
   <xml name="stdio">
@@ -10,17 +10,29 @@
         <exit_code range="1:"  level="fatal" description="Error" />
     </stdio>
   </xml>
+  <token name="@WRAPPER_VERSION@">4.0</token>
+  <token name="@SNPEFF_VERSION@">SnpEff4.0</token>
+  <token name="@SNPEFF_DATABASE_URL@">https://snpeff-data.galaxyproject.org/databases/v4_0/</token>
   <token name="@EXTERNAL_DOCUMENTATION@">
 
-For details about this tool, please go to http://snpeff.sourceforge.net/SnpSift.html#intervals
+For details about this tool, please go to:
+	http://snpeff.sourceforge.net/SnpEff_manual.html
+
+  </token>
+  <token name="@CITATION_SECTION@">------
+
+**Citation**
+
+For the underlying tool, please cite the following two publications:
+
+SnpEff citation:
+"A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly 6(2):80-92, 2012
 
   </token>
   <xml name="citations">
       <citations>
-        <citation type="doi">10.3389/fgene.2012.00035</citation>
         <citation type="doi">10.4161/fly.19695</citation>
         <yield />
       </citations>
   </xml>
-
 </macros>