Mercurial > repos > iuc > snpeff
comparison data_manager_conf.xml @ 0:39bac90c773d draft
Uploaded
| author | iuc |
|---|---|
| date | Fri, 15 Aug 2014 06:00:47 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:39bac90c773d |
|---|---|
| 1 <?xml version="1.0"?> | |
| 2 <data_managers> | |
| 3 <data_manager tool_file="data_manager/data_manager_snpEff_databases.xml" id="data_manager_snpeff_databases" > | |
| 4 <data_table name="snpeff_databases"> <!-- Defines a Data Table to be modified. --> | |
| 5 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 8 </output> | |
| 9 </data_table> | |
| 10 </data_manager> | |
| 11 <data_manager tool_file="data_manager/data_manager_snpEff_download.xml" id="data_manager_snpeff_download" > | |
| 12 <data_table name="snpeff_genomedb"> <!-- Defines a Data Table to be modified. --> | |
| 13 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 14 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 15 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 16 <column name="path" output_ref="out_file" > | |
| 17 <move type="directory" relativize_symlinks="True"> | |
| 18 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">snpEff/data</target> | |
| 19 </move> | |
| 20 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/snpEff/data</value_translation> | |
| 21 <value_translation type="function">abspath</value_translation> | |
| 22 </column> | |
| 23 </output> | |
| 24 </data_table> | |
| 25 <data_table name="snpeff_regulationdb"> <!-- Defines a Data Table to be modified. --> | |
| 26 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 27 <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 28 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 29 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 30 </output> | |
| 31 </data_table> | |
| 32 <data_table name="snpeff_annotations"> <!-- Defines a Data Table to be modified. --> | |
| 33 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 34 <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 35 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 36 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 37 </output> | |
| 38 </data_table> | |
| 39 </data_manager> | |
| 40 </data_managers> | |
| 41 | |
| 42 |