Mercurial > repos > iuc > seqtk

annotate seqtk_randbase.xml @ 20:8f26884c60b6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author iuc
date Wed, 01 Sep 2021 08:36:24 +0000
parents 069c8f0695ee
children f2a792351212
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1 <?xml version="1.0"?>
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2 <tool id="seqtk_randbase" name="seqtk_randbase" version="@TOOL_VERSION@.1">
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3 <description>choose a random base from hets</description>
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4 <expand macro="bio_tools"/>
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5 <macros>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="requirements"/>
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9 <expand macro="stdio"/>
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10 <command><![CDATA[
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11 seqtk randbase
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12 '$in_file'
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13 @CONDITIONAL_GZIP_OUT@
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14 ]]></command>
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15 <inputs>
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16 <expand macro="in_faq"/>
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17 </inputs>
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18 <outputs>
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19 <data name="default" format_source="in_file" label="Unambiguous $in_file.name"/>
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20 </outputs>
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21 <tests>
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22 <test>
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23 <param name="in_file" value="seqtk_randbase.fa"/>
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24 <output name="default" file="seqtk_randbase.out" ftype="fasta" compare="sim_size"/>
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25 </test>
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26 <test>
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27 <param name="in_file" value="seqtk_randbase.fa.gz" ftype="fasta.gz"/>
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28 <output name="default" file="seqtk_randbase.out.gz" ftype="fasta.gz" compare="sim_size"/>
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29 </test>
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30 </tests>
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31 <help><![CDATA[
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32 **What it does**
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33
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34 Randomly resolves ambiguous bases
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35
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36 ::
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37
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38 # Input fasta
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39 >ambig
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40 ACGTMRWSYK
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41
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42 results in
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43
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44 ::
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45
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46 # Output result
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47 >ambig
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48 ACGTCGTGTT
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49
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50 @ATTRIBUTION@
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51 ]]></help>
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52 <expand macro="citation" />
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53 </tool>