Mercurial > repos > iuc > seqkit_stats

changeset 4:be99273091de draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqkit commit 3dbd70c33e5adb451abd1cbd195c2e244c2b0c59
author iuc
date Mon, 27 May 2024 09:38:53 +0000
parents f1cd895ebaad
children cf5c5debb212
files macros.xml seqkit_stats.xml test-data/input1.fasta.gz test-data/sort_output1.fastq.gz test-data/sort_output2.fasta.gz test-data/sort_output3.fasta.gz test-data/sort_output4.fasta.gz test-data/sort_output5.fastq.gz test-data/sort_output6.fastq.gz test-data/stats_output1.tabular test-data/stats_output2.tabular test-data/translate_output1.fasta.gz test-data/translate_output2.fastq.gz test-data/translate_output3.fastq.gz
diffstat 14 files changed, 6 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Sun Nov 06 17:46:19 2022 +0000
+++ b/macros.xml	Mon May 27 09:38:53 2024 +0000
@@ -1,6 +1,6 @@
 <macros>
-    <token name="@TOOL_VERSION@">2.3.1</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@TOOL_VERSION@">2.8.2</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">20.09</token>
     <xml name="bio_tools">
         <xrefs>
--- a/seqkit_stats.xml	Sun Nov 06 17:46:19 2022 +0000
+++ b/seqkit_stats.xml	Mon May 27 09:38:53 2024 +0000
@@ -56,4 +56,3 @@
     </help>
     <expand macro="citations"/>
 </tool>
-
Binary file test-data/input1.fasta.gz has changed
Binary file test-data/sort_output1.fastq.gz has changed
Binary file test-data/sort_output2.fasta.gz has changed
Binary file test-data/sort_output3.fasta.gz has changed
Binary file test-data/sort_output4.fasta.gz has changed
Binary file test-data/sort_output5.fastq.gz has changed
Binary file test-data/sort_output6.fastq.gz has changed
--- a/test-data/stats_output1.tabular	Sun Nov 06 17:46:19 2022 +0000
+++ b/test-data/stats_output1.tabular	Mon May 27 09:38:53 2024 +0000
@@ -1,2 +1,2 @@
-file	format	type	num_seqs	sum_len	min_len	avg_len	max_len	Q1	Q2	Q3	sum_gap	N50	Q20(%)	Q30(%)	GC(%)
-input1_fastq_gz	FASTQ	DNA	5	505	101	101.0	101	50.5	101.0	50.5	0	101	98.02	89.31	35.45
+file	format	type	num_seqs	sum_len	min_len	avg_len	max_len	Q1	Q2	Q3	sum_gap	N50	N50_num	Q20(%)	Q30(%)	AvgQual	GC(%)
+input1_fastq_gz	FASTQ	DNA	5	505	101	101.0	101	101.0	101.0	101.0	0	101	1	98.02	89.31	25.93	35.45
--- a/test-data/stats_output2.tabular	Sun Nov 06 17:46:19 2022 +0000
+++ b/test-data/stats_output2.tabular	Mon May 27 09:38:53 2024 +0000
@@ -1,2 +1,2 @@
-file	format	type	num_seqs	sum_len	min_len	avg_len	max_len	Q1	Q2	Q3	sum_gap	N50	Q20(%)	Q30(%)	GC(%)
-input1_fasta_gz	FASTA	DNA	3	10732	1213	3577.3	4796	2968.0	4723.0	4759.5	0	4723	0.00	0.00	48.15
+file	format	type	num_seqs	sum_len	min_len	avg_len	max_len	Q1	Q2	Q3	sum_gap	N50	N50_num	Q20(%)	Q30(%)	AvgQual	GC(%)
+input1_fasta_gz	FASTA	DNA	3	10732	1213	3577.3	4796	2968.0	4723.0	4759.5	0	4723	2	0.00	0.00	0.00	48.15
Binary file test-data/translate_output1.fasta.gz has changed
Binary file test-data/translate_output2.fastq.gz has changed
Binary file test-data/translate_output3.fastq.gz has changed