Mercurial > repos > iuc > seqkit_fx2tab
changeset 3:8d9ee1d00f7f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqkit commit 3dbd70c33e5adb451abd1cbd195c2e244c2b0c59
| author | iuc |
|---|---|
| date | Mon, 27 May 2024 09:39:12 +0000 |
| parents | 4e78c6a27670 |
| children | 955d1814ed1c |
| files | macros.xml seqkit_fx2tab.xml test-data/input1.fasta.gz test-data/sort_output1.fastq.gz test-data/sort_output2.fasta.gz test-data/sort_output3.fasta.gz test-data/sort_output4.fasta.gz test-data/sort_output5.fastq.gz test-data/sort_output6.fastq.gz test-data/stats_output1.tabular test-data/stats_output2.tabular test-data/translate_output1.fasta.gz test-data/translate_output2.fastq.gz test-data/translate_output3.fastq.gz |
| diffstat | 14 files changed, 6 insertions(+), 7 deletions(-) [+] |
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--- a/macros.xml Sun Nov 06 17:46:54 2022 +0000 +++ b/macros.xml Mon May 27 09:39:12 2024 +0000 @@ -1,6 +1,6 @@ <macros> - <token name="@TOOL_VERSION@">2.3.1</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@TOOL_VERSION@">2.8.2</token> + <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">20.09</token> <xml name="bio_tools"> <xrefs>
--- a/seqkit_fx2tab.xml Sun Nov 06 17:46:54 2022 +0000 +++ b/seqkit_fx2tab.xml Mon May 27 09:39:12 2024 +0000 @@ -86,4 +86,3 @@ </help> <expand macro="citations"/> </tool> -
--- a/test-data/stats_output1.tabular Sun Nov 06 17:46:54 2022 +0000 +++ b/test-data/stats_output1.tabular Mon May 27 09:39:12 2024 +0000 @@ -1,2 +1,2 @@ -file format type num_seqs sum_len min_len avg_len max_len Q1 Q2 Q3 sum_gap N50 Q20(%) Q30(%) GC(%) -input1_fastq_gz FASTQ DNA 5 505 101 101.0 101 50.5 101.0 50.5 0 101 98.02 89.31 35.45 +file format type num_seqs sum_len min_len avg_len max_len Q1 Q2 Q3 sum_gap N50 N50_num Q20(%) Q30(%) AvgQual GC(%) +input1_fastq_gz FASTQ DNA 5 505 101 101.0 101 101.0 101.0 101.0 0 101 1 98.02 89.31 25.93 35.45
--- a/test-data/stats_output2.tabular Sun Nov 06 17:46:54 2022 +0000 +++ b/test-data/stats_output2.tabular Mon May 27 09:39:12 2024 +0000 @@ -1,2 +1,2 @@ -file format type num_seqs sum_len min_len avg_len max_len Q1 Q2 Q3 sum_gap N50 Q20(%) Q30(%) GC(%) -input1_fasta_gz FASTA DNA 3 10732 1213 3577.3 4796 2968.0 4723.0 4759.5 0 4723 0.00 0.00 48.15 +file format type num_seqs sum_len min_len avg_len max_len Q1 Q2 Q3 sum_gap N50 N50_num Q20(%) Q30(%) AvgQual GC(%) +input1_fasta_gz FASTA DNA 3 10732 1213 3577.3 4796 2968.0 4723.0 4759.5 0 4723 2 0.00 0.00 0.00 48.15