Mercurial > repos > iuc > semibin_bin

diff bin.xml @ 3:b8dab9f6d5f7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/semibin commit 2c08a2e49a2844efe92340c5a9e9c8323e4a33d6
author iuc
date Tue, 28 Oct 2025 08:16:27 +0000
parents 1bd3c93f565f
children
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line diff
--- a/bin.xml	Tue Mar 25 15:51:24 2025 +0000
+++ b/bin.xml	Tue Oct 28 08:16:27 2025 +0000
@@ -12,7 +12,7 @@
 #import re
 @FASTA_FILES@
 SemiBin2 bin
-    --input-fasta 'contigs.fasta'
+    --input-fasta 'contigs.$input_fasta.ext'
     --data '$data'
 #if $mod.select == 'history'
     --model '$mod.model'
@@ -73,7 +73,7 @@
         <test expect_num_outputs="2">
             <conditional name="mode">
                 <param name="select" value="single"/>
-                <param name="input_fasta" ftype="fasta" value="input_single.fasta"/>
+                <param name="input_fasta" ftype="fasta.gz" value="input_single.fasta.gz"/>
             </conditional>
             <param name="data" ftype="csv" value="data.csv"/>
             <conditional name="mod">
@@ -114,7 +114,7 @@
         <test expect_num_outputs="1">
             <conditional name="mode">
                 <param name="select" value="single"/>
-                <param name="input_fasta" ftype="fasta" value="input_single.fasta"/>
+                <param name="input_fasta" ftype="fasta.bz2" value="input_single.fasta.bz2"/>
             </conditional>
             <param name="data" ftype="csv" value="data.csv"/>
             <conditional name="mod">