Mercurial > repos > iuc > semibin_bin

comparison bin.xml @ 3:b8dab9f6d5f7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/semibin commit 2c08a2e49a2844efe92340c5a9e9c8323e4a33d6
author iuc
date Tue, 28 Oct 2025 08:16:27 +0000
parents 1bd3c93f565f
children
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2:1bd3c93f565f 3:b8dab9f6d5f7
10 <expand macro="version"/> 10 <expand macro="version"/>
11 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
12 #import re 12 #import re
13 @FASTA_FILES@ 13 @FASTA_FILES@
14 SemiBin2 bin 14 SemiBin2 bin
15 --input-fasta 'contigs.fasta' 15 --input-fasta 'contigs.$input_fasta.ext'
16 --data '$data' 16 --data '$data'
17 #if $mod.select == 'history' 17 #if $mod.select == 'history'
18 --model '$mod.model' 18 --model '$mod.model'
19 #else 19 #else
20 --environment '$mod.environment' 20 --environment '$mod.environment'
71 </outputs> 71 </outputs>
72 <tests> 72 <tests>
73 <test expect_num_outputs="2"> 73 <test expect_num_outputs="2">
74 <conditional name="mode"> 74 <conditional name="mode">
75 <param name="select" value="single"/> 75 <param name="select" value="single"/>
76 <param name="input_fasta" ftype="fasta" value="input_single.fasta"/> 76 <param name="input_fasta" ftype="fasta.gz" value="input_single.fasta.gz"/>
77 </conditional> 77 </conditional>
78 <param name="data" ftype="csv" value="data.csv"/> 78 <param name="data" ftype="csv" value="data.csv"/>
79 <conditional name="mod"> 79 <conditional name="mod">
80 <param name="select" value="history"/> 80 <param name="select" value="history"/>
81 <param name="model" ftype="h5" value="model.h5"/> 81 <param name="model" ftype="h5" value="model.h5"/>
112 </output_collection> 112 </output_collection>
113 </test> 113 </test>
114 <test expect_num_outputs="1"> 114 <test expect_num_outputs="1">
115 <conditional name="mode"> 115 <conditional name="mode">
116 <param name="select" value="single"/> 116 <param name="select" value="single"/>
117 <param name="input_fasta" ftype="fasta" value="input_single.fasta"/> 117 <param name="input_fasta" ftype="fasta.bz2" value="input_single.fasta.bz2"/>
118 </conditional> 118 </conditional>
119 <param name="data" ftype="csv" value="data.csv"/> 119 <param name="data" ftype="csv" value="data.csv"/>
120 <conditional name="mod"> 120 <conditional name="mod">
121 <param name="select" value="built-in"/> 121 <param name="select" value="built-in"/>
122 <param name="environment" value="human_gut"/> 122 <param name="environment" value="human_gut"/>