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comparison samtools_view.xml @ 12:b2821e450815 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_view commit c5ded4208dd70e88596ddc725795a2401773f02d"
author iuc
date Sat, 27 Nov 2021 12:30:31 +0000
parents 61d97dda5ece
children ef12d752aba9
comparison
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11:61d97dda5ece 12:b2821e450815
2 <description>- reformat, filter, or subsample SAM, BAM or CRAM</description> 2 <description>- reformat, filter, or subsample SAM, BAM or CRAM</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 <token name="@REF_DATA@"> 5 <token name="@REF_DATA@">
6 ## additional reference data 6 ## additional reference data
7 #if $reffa!=None: 7 #if $use_ref:
8 -T '$reffa' 8 -T "\$reffa"
9 -t '$reffai' 9 -t "\$reffai"
10 #end if 10 #end if
11 </token> 11 </token>
12 <xml name="read_output_formatting"> 12 <xml name="read_output_formatting">
13 <yield /> 13 <yield />
14 <section name="adv_output" title="Read Reformatting Options" expanded="false"> 14 <section name="adv_output" title="Read Reformatting Options" expanded="false">