Mercurial > repos > iuc > reprof

diff reprof.xml @ 12:00316da7014c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/reprof commit b2967b1114c5b29e182af5253bb58be52347bdc0-dirty
author iuc
date Fri, 11 Dec 2015 13:48:25 -0500
parents 5a02100f8f6e
children d167e711cf32
line wrap: on
line diff
--- a/reprof.xml	Tue Dec 08 14:58:24 2015 -0500
+++ b/reprof.xml	Fri Dec 11 13:48:25 2015 -0500
@@ -26,30 +26,30 @@
   <outputs>
       <data format="gff3" name="secondary_structure" from_work_dir="secondary_structure.gff3" label="Secondary Structure of ${on_string}"/>
       <data format="wig" name="pE" from_work_dir="pE.wig" label="Probability of Extended/Sheet (${on_string})">
-        <filter>'pE' in outputs</filter>
+        <filter>outputs is not None and 'pE' in outputs</filter>
       </data>
       <data format="wig" name="pH" from_work_dir="pH.wig" label="Probability of Helix (${on_string})">
-        <filter>'pH' in outputs</filter>
+        <filter>outputs is not None and 'pH' in outputs</filter>
       </data>
       <data format="wig" name="pL" from_work_dir="pL.wig" label="Probability of Loop (${on_string})" >
-        <filter>'pL' in outputs</filter>
+        <filter>outputs is not None and 'pL' in outputs</filter>
       </data>
       <data format="wig" name="RI_S" from_work_dir="RI_S.wig" label="Secondary Structure Reliability Index (${on_string})">
-        <filter>'RI_S' in outputs</filter>
+        <filter>outputs is not None and 'RI_S' in outputs</filter>
       </data>
 
       <data format="gff3" name="solvent_accessibility" from_work_dir="solvent_accessibility.gff3" label="Solvent Accessibile Regions of ${on_string}" />
       <data format="wig" name="PACC" from_work_dir="PACC.wig" label="Absolute Solvent Accessibility of ${on_string}">
-        <filter>'PACC' in outputs</filter>
+        <filter>outputs is not None and 'PACC' in outputs</filter>
       </data>
       <data format="wig" name="PREL" from_work_dir="PREL.wig" label="Relative Solvent Accessibility of ${on_string}">
-        <filter>'PREL' in outputs</filter>
+        <filter>outputs is not None and 'PREL' in outputs</filter>
       </data>
       <data format="wig" name="P10" from_work_dir="P10.wig" label="Relative Solvent Accessibility (0-9) of ${on_string}">
-        <filter>'P10' in outputs</filter>
+        <filter>outputs is not None and 'P10' in outputs</filter>
       </data>
       <data format="wig" name="RI_A" from_work_dir="RI_A.wig" label="Solvent Accessibility Reliability Index (${on_string})">
-        <filter>'RI_A' in outputs</filter>
+        <filter>outputs is not None and 'RI_A' in outputs</filter>
       </data>
   </outputs>
   <tests>
@@ -103,6 +103,6 @@
       ]]></help>
   <citations>
     <citation type="doi">10.1186/1471-2105-10-S13-O3</citation>
-    <citation type="doi">10.1002/pro.5560050824View</citation>
+    <citation type="doi">10.1002/pro.5560050824</citation>
   </citations>
 </tool>