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comparison reprof.xml @ 12:00316da7014c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/reprof commit b2967b1114c5b29e182af5253bb58be52347bdc0-dirty
author iuc
date Fri, 11 Dec 2015 13:48:25 -0500
parents 5a02100f8f6e
children d167e711cf32
comparison
equal deleted inserted replaced
11:197660bbbf92 12:00316da7014c
24 </param> 24 </param>
25 </inputs> 25 </inputs>
26 <outputs> 26 <outputs>
27 <data format="gff3" name="secondary_structure" from_work_dir="secondary_structure.gff3" label="Secondary Structure of ${on_string}"/> 27 <data format="gff3" name="secondary_structure" from_work_dir="secondary_structure.gff3" label="Secondary Structure of ${on_string}"/>
28 <data format="wig" name="pE" from_work_dir="pE.wig" label="Probability of Extended/Sheet (${on_string})"> 28 <data format="wig" name="pE" from_work_dir="pE.wig" label="Probability of Extended/Sheet (${on_string})">
29 <filter>'pE' in outputs</filter> 29 <filter>outputs is not None and 'pE' in outputs</filter>
30 </data> 30 </data>
31 <data format="wig" name="pH" from_work_dir="pH.wig" label="Probability of Helix (${on_string})"> 31 <data format="wig" name="pH" from_work_dir="pH.wig" label="Probability of Helix (${on_string})">
32 <filter>'pH' in outputs</filter> 32 <filter>outputs is not None and 'pH' in outputs</filter>
33 </data> 33 </data>
34 <data format="wig" name="pL" from_work_dir="pL.wig" label="Probability of Loop (${on_string})" > 34 <data format="wig" name="pL" from_work_dir="pL.wig" label="Probability of Loop (${on_string})" >
35 <filter>'pL' in outputs</filter> 35 <filter>outputs is not None and 'pL' in outputs</filter>
36 </data> 36 </data>
37 <data format="wig" name="RI_S" from_work_dir="RI_S.wig" label="Secondary Structure Reliability Index (${on_string})"> 37 <data format="wig" name="RI_S" from_work_dir="RI_S.wig" label="Secondary Structure Reliability Index (${on_string})">
38 <filter>'RI_S' in outputs</filter> 38 <filter>outputs is not None and 'RI_S' in outputs</filter>
39 </data> 39 </data>
40 40
41 <data format="gff3" name="solvent_accessibility" from_work_dir="solvent_accessibility.gff3" label="Solvent Accessibile Regions of ${on_string}" /> 41 <data format="gff3" name="solvent_accessibility" from_work_dir="solvent_accessibility.gff3" label="Solvent Accessibile Regions of ${on_string}" />
42 <data format="wig" name="PACC" from_work_dir="PACC.wig" label="Absolute Solvent Accessibility of ${on_string}"> 42 <data format="wig" name="PACC" from_work_dir="PACC.wig" label="Absolute Solvent Accessibility of ${on_string}">
43 <filter>'PACC' in outputs</filter> 43 <filter>outputs is not None and 'PACC' in outputs</filter>
44 </data> 44 </data>
45 <data format="wig" name="PREL" from_work_dir="PREL.wig" label="Relative Solvent Accessibility of ${on_string}"> 45 <data format="wig" name="PREL" from_work_dir="PREL.wig" label="Relative Solvent Accessibility of ${on_string}">
46 <filter>'PREL' in outputs</filter> 46 <filter>outputs is not None and 'PREL' in outputs</filter>
47 </data> 47 </data>
48 <data format="wig" name="P10" from_work_dir="P10.wig" label="Relative Solvent Accessibility (0-9) of ${on_string}"> 48 <data format="wig" name="P10" from_work_dir="P10.wig" label="Relative Solvent Accessibility (0-9) of ${on_string}">
49 <filter>'P10' in outputs</filter> 49 <filter>outputs is not None and 'P10' in outputs</filter>
50 </data> 50 </data>
51 <data format="wig" name="RI_A" from_work_dir="RI_A.wig" label="Solvent Accessibility Reliability Index (${on_string})"> 51 <data format="wig" name="RI_A" from_work_dir="RI_A.wig" label="Solvent Accessibility Reliability Index (${on_string})">
52 <filter>'RI_A' in outputs</filter> 52 <filter>outputs is not None and 'RI_A' in outputs</filter>
53 </data> 53 </data>
54 </outputs> 54 </outputs>
55 <tests> 55 <tests>
56 <test> 56 <test>
57 <param name="query" value="test.fa" /> 57 <param name="query" value="test.fa" />
101 manual curation process and which has been verified by a curator. 101 manual curation process and which has been verified by a curator.
102 102
103 ]]></help> 103 ]]></help>
104 <citations> 104 <citations>
105 <citation type="doi">10.1186/1471-2105-10-S13-O3</citation> 105 <citation type="doi">10.1186/1471-2105-10-S13-O3</citation>
106 <citation type="doi">10.1002/pro.5560050824View</citation> 106 <citation type="doi">10.1002/pro.5560050824</citation>
107 </citations> 107 </citations>
108 </tool> 108 </tool>