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comparison reprof.py @ 7:fb0936cf5bef draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/reprof commit db55deda35d1623ff48fbea7b3d0690a2cd9cd9f-dirty
author iuc
date Tue, 08 Dec 2015 13:46:13 -0500
parents 141da185be70
children
comparison
equal deleted inserted replaced
6:3658e4d701fc 7:fb0936cf5bef
87 classification = 'alpha-beta' 87 classification = 'alpha-beta'
88 else: 88 else:
89 classification = 'mixed' 89 classification = 'mixed'
90 90
91 with open(path, 'a') as handle: 91 with open(path, 'a') as handle:
92 handle.write("{0}\t{1}\n".format(id, classification)) 92 handle.write('# id\t% alpha\t% beta\tclass\n')
93 handle.write('{0}\t{1:.2f}\t{2:.2f}\t{3}'.format(id, h, e, classification))
93 94
94 def main(fasta, modeldir): 95 def main(fasta, modeldir):
95 for record in SeqIO.parse(fasta, 'fasta'): 96 for record in SeqIO.parse(fasta, 'fasta'):
96 tmp = tempfile.NamedTemporaryFile(delete=False) 97 tmp = tempfile.NamedTemporaryFile(delete=False)
97 SeqIO.write([record], tmp, 'fasta') 98 SeqIO.write([record], tmp, 'fasta')