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comparison raxml.xml @ 9:9dd2607a4ec6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit 6e1b47bf8f06b9d92b369c2f36e52f4fc451d39c
author iuc
date Thu, 21 Jul 2022 15:15:46 +0000
parents 0a94c20da2ce
children 655428a2e1e1
comparison
equal deleted inserted replaced
8:0a94c20da2ce 9:9dd2607a4ec6
1 <tool id="raxml" name="Phyogenetic reconstruction with RAxML" version="8.2.4+galaxy2"> 1 <tool id="raxml" name="Phyogenetic reconstruction with RAxML" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>- Maximum Likelihood based inference of large phylogenetic trees</description> 2 <description>- Maximum Likelihood based inference of large phylogenetic trees</description>
3 <macros>
4 <token name="@TOOL_VERSION@">8.2.4</token>
5 <token name="@VERSION_SUFFIX@">3</token>
6 </macros>
3 <xrefs> 7 <xrefs>
4 <xref type="bio.tools">raxml</xref> 8 <xref type="bio.tools">raxml</xref>
5 </xrefs> 9 </xrefs>
6 <requirements> 10 <requirements>
7 <requirement type="package" version="8.2.4">raxml</requirement> 11 <requirement type="package" version="@TOOL_VERSION@">raxml</requirement>
8 <requirement type="package" version="3.6">python</requirement> 12 <requirement type="package" version="3.6">python</requirement>
9 </requirements> 13 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 14 <command detect_errors="exit_code"><![CDATA[
11 ## binary is hard-coded to the pthreads enabled raxml executable if threads > 1 15 ## binary is hard-coded to the pthreads enabled raxml executable if threads > 1
12 slots=\${GALAXY_SLOTS:-1}; 16 slots=\${GALAXY_SLOTS:-1};
467 <output name="parsimonyTree" ftype="nhx"> 471 <output name="parsimonyTree" ftype="nhx">
468 <assert_contents> 472 <assert_contents>
469 <has_text_matching expression="Chicken" /> 473 <has_text_matching expression="Chicken" />
470 </assert_contents> 474 </assert_contents>
471 </output> 475 </output>
472 <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy.multi" ftype="nhx"/> 476 <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy.multi" ftype="nhx" compare="re_match"/>
473 <output name="bestTree" ftype="nhx"> 477 <output name="bestTree" ftype="nhx">
474 <assert_contents> 478 <assert_contents>
475 <has_text_matching expression="Whale" /> 479 <has_text_matching expression="Whale" />
476 </assert_contents> 480 </assert_contents>
477 </output> 481 </output>